Protein

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Genbank accession
XRL29890.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence RBPdetect
Probability 0,86
TF
Evidence RBPdetect2
Probability 0,96
Protein sequence
MPRLIFKNNFEVALAQPTTTSDTTITIRSGSGFPTLAANEQVVATIVDAATGLQFEIVTVTAVVGNVLTVQRAQEGTAARAWAAGDLLSIRTTAALLAGTIRNFGPIPSGINLDALTGPWFGQYYQRSDSQASPVLNYPIQQAGVLEVFQVPANSASDCIQKYHPYSSKTEYRRTYNGVEWSPWYSEFNSGGIVPVSNGGTGQTTIQGMKTAFGFGQVADQNIVPTSMGGTGSGDNAQAWLNIRPQGSTPLAGDPVNDYDATTKRWVENLINTGTVGPSMNGVMNYGVGDFHLRDSRAYIQPYEVVADGQLLNRADWPELWAYAQMLSPIADADWLADPLKRGKYSLGNGTTTFRVPDRNGVQTGSVRALFARGDGGNSSNDGMIMESFLPNITGNINFHGSGPASEPASGTVVAGAGGAFVNGEGFTIPRYVRGVSLLSSGANSLGSITLRASNSSPAYGRNNLATDEVLPRNFSGVWVIRASGGFVAAKTSWSVINGDATRPIDGTRVESGKVSAEYKIGTSIEAQGTVYTSATIGGTYSTQLSVKNVTAGKEKDISLTDDGLLWSDRFAARYGTLMSWAETGSKSGTFSMVRQGLGQNYGFNSLISGSQSVNTGYATTVHHGMIHNNNGSFAQATWIASGDDDAKYQTKMQIQPNVEDVFFSVSVPGSDSFFTLQKNAISDENLKHDIQPGTVEKAWSNLSSLEYVTFIYNNDEKERVRRGIIAQQAETIDPLYVKTIKFYPSEGVEVEQKQLDTTPMLLDTMHVVQELMKKVESLETEIAALKAAK
Physico‐chemical
properties
protein length:790 AA
molecular weight: 84729,37530 Da
isoelectric point:5,29361
aromaticity:0,08987
hydropathy:-0,25532

Domains

Domains [InterPro]
DC_0085
STR
1–561
DC_0085 IPR030392 Coil
cd19958
STR
105–184
cd19958 SSF88874 IPR030392
DC_1985
RBD
484–790
DC_1985
XRL29890.1
1 790
Architecture
STR
RBD
STR 1-561 | RBD 562-790
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XRL29890.1
1 790
Domain Start End Length (AA) Confidence
N-terminal 1 508 508 0,5860
Central domain 509 707 200 0,1016
C-terminal 708 790 82 0,9953
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-508
Central
509-707
C-terminal
708-790

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage kaset
[NCBI] 		3411979 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Escherichia coli
[NCBI] 		562 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XRL29890.1 [NCBI]
Genbank nucleotide accession
PV245935.1 [NCBI]
CDS location
range 64273 -> 66645
strand -
CDS
ATGCCAAGGCTAATATTCAAAAACAACTTTGAGGTCGCGCTGGCTCAACCAACGACGACTTCAGACACCACAATTACAATCCGCTCAGGGTCGGGCTTTCCGACCTTGGCTGCAAACGAGCAAGTAGTGGCGACAATCGTCGACGCTGCAACAGGCCTCCAATTCGAAATCGTCACAGTAACAGCCGTTGTTGGCAACGTACTAACCGTGCAGCGTGCACAGGAAGGGACTGCGGCACGTGCATGGGCGGCTGGTGACCTTCTTTCCATTCGAACCACTGCCGCGCTTTTGGCAGGAACAATCAGGAATTTCGGTCCAATCCCTTCAGGAATTAATCTTGATGCGCTTACTGGTCCTTGGTTCGGTCAGTACTATCAAAGAAGTGATTCTCAAGCATCTCCAGTGCTTAATTATCCCATTCAGCAAGCTGGTGTTCTTGAAGTGTTCCAAGTTCCAGCCAATTCAGCAAGTGATTGTATTCAGAAGTATCACCCATACAGTTCAAAAACTGAATACAGAAGGACATATAATGGAGTTGAATGGTCACCTTGGTACAGTGAATTCAACTCAGGCGGAATAGTGCCAGTGTCAAACGGTGGAACGGGTCAAACCACCATTCAAGGCATGAAGACTGCTTTTGGATTTGGTCAAGTTGCTGATCAAAACATTGTTCCAACTTCCATGGGCGGAACAGGCTCAGGGGATAATGCGCAAGCATGGCTGAACATACGCCCTCAAGGATCAACGCCACTTGCAGGCGACCCCGTTAACGATTATGATGCAACTACCAAGCGTTGGGTCGAGAACTTGATAAACACAGGCACCGTTGGCCCAAGCATGAATGGAGTCATGAACTATGGTGTAGGTGATTTCCACTTACGTGATAGTCGTGCTTATATTCAACCTTATGAAGTCGTTGCCGATGGACAACTGTTAAACCGTGCGGACTGGCCTGAGCTTTGGGCGTATGCGCAAATGCTTTCACCTATTGCTGACGCTGACTGGCTTGCAGACCCATTGAAGCGCGGCAAGTATTCATTGGGCAACGGCACAACAACATTCCGCGTACCGGACAGGAACGGCGTTCAAACGGGAAGTGTTCGTGCACTTTTTGCCCGTGGCGATGGCGGAAACTCGTCAAATGACGGAATGATAATGGAATCCTTCCTACCAAACATTACTGGCAACATCAACTTCCACGGGTCCGGCCCTGCCAGTGAGCCAGCATCAGGAACGGTTGTCGCAGGTGCTGGCGGTGCATTCGTCAATGGAGAAGGATTCACCATTCCGCGATATGTTCGTGGGGTATCACTTTTAAGTTCCGGTGCAAACTCTTTGGGCAGCATCACACTAAGAGCTTCAAACTCAAGTCCAGCTTACGGTCGTAATAACCTTGCAACGGATGAAGTGCTGCCTCGCAACTTCTCAGGCGTTTGGGTGATTCGTGCATCGGGTGGATTTGTTGCCGCGAAAACGTCTTGGAGTGTTATCAACGGTGACGCCACCAGACCGATAGACGGTACGAGAGTTGAATCAGGAAAAGTAAGCGCAGAATACAAGATTGGAACTTCCATCGAAGCGCAAGGAACGGTTTACACATCAGCAACGATTGGCGGTACATATTCAACTCAATTATCAGTAAAAAATGTCACTGCAGGTAAAGAAAAAGACATCAGCTTGACGGATGACGGTCTATTATGGTCTGACCGATTTGCAGCACGTTACGGAACATTGATGTCATGGGCTGAGACAGGATCAAAGTCAGGCACCTTCTCGATGGTTCGTCAGGGTCTTGGTCAGAACTATGGTTTCAACAGCCTTATCAGCGGTAGTCAATCTGTTAATACAGGATACGCAACTACTGTTCACCATGGCATGATTCACAACAACAATGGAAGTTTTGCGCAAGCTACGTGGATTGCTTCTGGTGATGATGATGCAAAGTATCAAACAAAGATGCAAATCCAGCCTAACGTAGAGGACGTATTCTTTTCAGTATCCGTTCCAGGCTCTGACAGCTTCTTCACTCTTCAAAAGAATGCTATCTCTGATGAGAATTTGAAGCATGACATACAACCAGGAACGGTAGAAAAAGCATGGAGCAACCTTTCATCTCTGGAGTATGTAACGTTCATCTACAACAATGATGAAAAGGAAAGGGTGAGAAGGGGAATTATCGCTCAACAGGCAGAGACTATTGACCCGTTGTATGTTAAAACGATTAAATTCTATCCGAGTGAAGGTGTCGAAGTTGAGCAAAAACAACTTGACACAACACCTATGCTTTTGGATACGATGCACGTTGTACAGGAGTTGATGAAGAAGGTCGAATCTTTAGAGACAGAGATAGCCGCGCTGAAAGCAGCAAAATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
02a575dcab473bb13d6f203781271bb30b91ed1fb3968f6976e743f0ad37dcf1
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7174
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Characterization and complete genome sequence of Escherichia phage kaset Imklin,N., Kvederaviciute,K., Aesomnuk,W., Arikit,S., Simoliunas,E. and Nasanit,R. 2022-01-10 — GenBank