Protein

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Genbank accession
QBP07033.1 [GenBank]
Protein name
tail spike protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MQTKVIKKSLAAQQDMLLNPEVVQQMRGGAAVNVNGFTKSFMQLWIESVGPEYAGNCEAGCTVTTDKTVVVSLVNGKAYEWTGAVPHVVVPGINPEDPASGFKLAVGYSLREQLASNSGASMIGADSGKTVQQELAAVKGTYGVLLSSYKDSQDPVTAAMAAAQAKGVAMIVDMNADYDYLVLYTGDRVMSLGNFTLTKRPGTMPNLPTHQQPDRPPQSQTSFNVDAGIIVVHPDTGFAVDVEVDGVNFLTKDKSEFGIFAPVVNNCKFTNCSFTGFRRGIRCYNASYNTFTDLRFKYYYTSADTYSEMAGIELNDPASLRSGTGNKFSGVLVDGYKTSYLMHVHGSVSFSSCIAKNVNTIGPVTAADHPVAFNVINCDAVRLESPVADGLYGSFLVVDSTTAPSSVVVTDPDVGSGVFGTASDVGAKIFNSKGGASSITVDGGSYRTNAPGYYLNFGGAFDTSQFDLRNADLTKCIDSIKNQPVPTGMNRITSSRTPIKFSAYKLARNTSPGDNFEFAVVEDDKFGIGGRGVYFRVPMTGNYRVRVNVGTYSLSDGATLDVRQAAAASGTGTLLTLNQPGRSTEKQTVYVDYTGKLNGGQFLHFYGNGIAGTNVAGAGADRASYLTIELI
Physico‐chemical
properties
protein length:631 AA
molecular weight: 67082,52510 Da
isoelectric point:5,88036
aromaticity:0,09509
hydropathy:-0,11395

Domains

Domains [InterPro]
DC_1670
ATT
1–55
DC_1670 G3DSA:2.10.10.80 DC_0983
G3DSA:2.10.10.80
ATT
53–116
G3DSA:2.10.10.80 IPR011050
QBP07033.1
1 631
Architecture
ATT
STR
ATT 1-116 | STR 117-449 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QBP07033.1
1 631
Domain Start End Length (AA) Confidence
N-terminal 1 152 152 0,9914
Central domain 153 491 340 0,9867
C-terminal 492 631 139 0,9883
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-152
Central
153-491
C-terminal
492-631

Taxonomy

  Name Taxonomy ID Lineage
Phage Edwardsiella phage ETP-1
[NCBI] 		2544920 Uroviricota > Caudoviricetes > Kafunavirus >
Host Edwardsiella tarda
[NCBI] 		636 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QBP07033.1 [NCBI]
Genbank nucleotide accession
MK574011.1 [NCBI]
CDS location
range 20870 -> 22765
strand -
CDS
ATGCAAACTAAAGTTATCAAGAAGAGCCTGGCAGCGCAGCAGGATATGCTGCTTAACCCAGAGGTCGTCCAGCAGATGCGCGGCGGCGCTGCAGTGAATGTTAATGGCTTTACCAAGAGCTTCATGCAGCTATGGATCGAGTCTGTTGGGCCTGAGTACGCAGGTAACTGCGAGGCCGGCTGCACAGTTACCACTGACAAGACTGTTGTCGTAAGCTTAGTTAACGGCAAAGCATACGAGTGGACTGGCGCAGTTCCGCACGTAGTTGTGCCTGGCATTAACCCAGAAGACCCGGCTAGTGGTTTTAAATTAGCTGTAGGTTATTCACTACGCGAACAGCTTGCGTCTAACTCTGGCGCTAGCATGATTGGTGCTGACTCAGGCAAGACAGTGCAGCAAGAGCTCGCGGCTGTAAAAGGTACGTATGGCGTTCTGCTTAGCTCATACAAAGATAGCCAGGACCCCGTTACAGCTGCCATGGCTGCTGCGCAGGCTAAAGGCGTTGCTATGATTGTAGACATGAATGCCGATTACGACTACCTGGTATTGTACACAGGGGATCGCGTAATGTCACTAGGCAATTTTACTCTGACTAAGCGTCCTGGCACTATGCCTAACTTACCTACGCACCAACAACCTGACCGTCCTCCGCAGTCTCAGACAAGTTTTAACGTGGACGCTGGTATCATCGTAGTGCACCCGGACACAGGCTTTGCAGTAGATGTTGAGGTAGACGGTGTTAACTTCTTGACTAAGGACAAGAGTGAGTTCGGTATTTTCGCCCCTGTGGTTAATAACTGCAAGTTTACTAACTGTTCATTTACAGGCTTCCGTCGTGGCATTCGTTGCTACAACGCTAGCTATAACACTTTTACTGACCTGCGCTTTAAGTATTACTACACTAGCGCAGATACGTACAGTGAAATGGCAGGCATCGAGCTAAATGATCCTGCAAGTCTACGCTCCGGCACGGGTAACAAGTTTAGCGGCGTGCTAGTCGACGGCTATAAAACTAGTTATCTGATGCACGTACACGGGTCTGTCTCGTTCTCTAGTTGTATTGCTAAGAATGTTAACACTATTGGGCCTGTAACCGCAGCTGACCACCCTGTTGCATTTAATGTCATCAACTGTGACGCTGTCCGGTTAGAGAGCCCTGTAGCGGATGGTCTGTATGGCTCATTTTTAGTTGTAGACTCTACTACAGCGCCGAGCTCCGTAGTTGTCACTGACCCTGATGTGGGCTCTGGCGTGTTCGGCACGGCTAGCGATGTTGGTGCTAAGATCTTTAACTCTAAAGGTGGCGCGAGTTCTATTACTGTAGATGGTGGGTCGTATAGGACCAACGCACCTGGCTACTACCTTAACTTTGGCGGCGCTTTTGACACTAGTCAGTTTGACCTGCGAAACGCTGACCTAACTAAATGTATTGATAGCATTAAGAACCAGCCGGTGCCTACTGGCATGAACCGTATTACCAGCTCTCGTACACCTATTAAATTCTCTGCGTACAAACTAGCTCGTAATACCAGCCCTGGAGACAACTTTGAGTTTGCCGTTGTAGAAGACGATAAGTTCGGTATCGGTGGGCGTGGTGTGTATTTCCGCGTGCCAATGACTGGCAACTATCGTGTGCGTGTTAATGTTGGCACTTATAGCTTGTCAGATGGTGCAACGCTAGATGTTAGGCAGGCAGCGGCCGCTTCTGGCACGGGTACACTGCTAACGCTTAACCAACCAGGTCGTTCTACAGAGAAACAGACCGTGTATGTCGATTATACGGGCAAACTGAATGGAGGTCAGTTCTTGCATTTCTATGGGAACGGCATCGCAGGCACTAACGTCGCTGGTGCAGGTGCAGATCGTGCCAGCTACTTAACTATCGAACTGATTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
98526993dbe1d0ce6bcccd3fe66a19a823c3d6e03a96b2eba444285f3c6b2858
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7447
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genome sequence of multidrug-resistant Edwardsiella tarda isolate infecting lytic phage ETP-1 Nikapitiya,C., Senevirathne,A., De Zoysa,M. and Lee,J. 2020-01 — GenBank