Protein

View in Explore
Genbank accession
XWX31548.1 [GenBank]
Protein name
glycerophosphoryl diester phosphodiesterase
RBP type
TSP
Evidence RBPdetect
Probability 0,74
TF
Evidence RBPdetect2
Probability 0,89
Protein sequence
MTKYLRLYNKAGTLLKSSGNIEGSTGTIKIENLFPETIYHSGDFLVSWVINGEELNRIPVPEFKTLSGNVDKTIIVYFSDINDENLVSLKGDSAYKIAIDNGFNGSQKEWLESLKGEPGEPGRQGDPGRDGVDITEGGSAYEIALAEGFQGTREEWLGSLKGEPGRQGEKGDPGEDGFGVDGASAYEIALENGFVGNIQDFLDSLVGEPGKDGQDGNDGLSAYQIALENGYTGTESEWLESLNIDVEVAKDYTDSKLISIDDKIAYARTRSFRDIKIHADLPAVFEGYQALLEGTSSNHIYPQGLAVDSDYLYVLYSYDDKSPGKEKILIVYARKDGYRQHSMYTLSNVASESIEIEYTYYGRYLYAKSGTDQLGKYDLSDLTGIPNTPTRLEPMQTYDIPVLYQFARFKNGWIFELANNSKGYYNQRDTFGLYNKNLSEKTSYFTTHASIGNLWSNSLTTKSSKRQGLTVFNNNILQAVGGNYNVGDDVGTYHLQGIQELSPSGEIINDYTYDPNELADFLGSQGKDVNRIEHEGLYTDKEYDKNNVYSIIIYNTTISREDSNENGLLFVEYRPYEPDHTFKQLGKPFLTSNSLYNPYKKVVSNKLVNDYTGKSIDSLKELALYMIDSYQDKVVFYSSWVDILDLSNVKIENGIKVTLENLDNKVFYLSYEDNFGVVKKKLTVNKSQETITIIDTRKEKSITGTDLLTLDYNTSFYSIGSVNSPSGVHVNGFVKCYVSDNNRILTYEPFNSNDTFKNIYNSGSWKGWKNSNVNIDTIVAQKHVITQDNGDRLRVSDVDPITLNTGYYQIWKMKNSPVGFDSNAQYWNVDIITAQDNVKQIKATLSATGQEYTRTIHKGNDLGWKFINNEKYGRNDFKLYTIPLMAPFNTANLSVMENNHIVTVRLQGKANSNTNNISDLDVVIGKLPAHIEYPKDFVRCTISSMTKGETEQFIGNLVIDTKGIITVKFNRSGTSNSYFGGSLSFPKGDNKNVAFNSTNTKVYDYPDPNVVSVQGSDYYDGYIFGAITRTKGNVTEIQVIDTNNTSSSFICTNQQENFSTLVGHGNSLKVVDKLNDEYLMYITMTDDPKIVPVFVNTTTKIARVGEGIKTMQDSGGSEKRIISIDRVDKVGSTYELYCLWYGIEFKYTISNINTVESLKGEQVFKLPLERVIEDKKMLLNDDSNSIKVYQDNLLDGDTFYITQYGENSSAILEYRVENAMAKSTGKYWYNYRTDAERYEIESIFKINGELYASISQKLFNKSTYDTYVIKVTLNT
Physico‐chemical
properties
protein length:1275 AA
molecular weight: 143413,80560 Da
isoelectric point:4,94325
aromaticity:0,11451
hydropathy:-0,50902

Domains

Domains [InterPro]
DC_1967
ATT
12–137
DC_1967 DC_0539
DC_1473
STR
122–178
DC_1473 DC_0843
XWX31548.1
1 1275
Architecture
ATT
STR
ATT 12-137 | STR 138-1087 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XWX31548.1
1 1275
Domain Start End Length (AA) Confidence
N-terminal 1 271 271 0,9931
Central domain 272 492 222 0,7541
C-terminal 493 1275 782 0,3593
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-271
Central
272-492
C-terminal
493-1275

Taxonomy

  Name Taxonomy ID Lineage
Phage Staphylococcus phage PG-2021_22
[NCBI] 		2815619 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Mammaliicoccus sciuri
[NCBI] 		1296 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Bacillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XWX31548.1 [NCBI]
Genbank nucleotide accession
MZ417324 [NCBI]
CDS location
range 62924 -> 66751
strand +
CDS
ATGACAAAGTATTTAAGGCTATATAATAAAGCAGGTACATTACTTAAATCAAGTGGTAACATTGAGGGTAGTACAGGAACAATTAAGATAGAGAATTTATTTCCGGAAACTATCTACCACAGTGGTGATTTTCTTGTTAGTTGGGTAATTAATGGTGAAGAACTTAATAGAATACCAGTACCGGAATTTAAAACATTAAGTGGTAATGTAGATAAGACTATCATTGTTTACTTTAGTGATATTAATGATGAGAACCTTGTATCATTAAAAGGTGATAGTGCATACAAAATAGCAATAGACAATGGGTTTAATGGCAGTCAAAAAGAATGGCTAGAAAGTCTTAAAGGGGAACCCGGTGAACCGGGTAGGCAAGGTGACCCCGGTAGAGATGGTGTAGATATTACCGAAGGTGGTTCTGCTTATGAAATAGCTTTAGCAGAAGGTTTTCAAGGAACTAGAGAAGAATGGCTAGGGTCACTTAAAGGTGAACCCGGTAGGCAAGGTGAAAAAGGAGACCCGGGTGAAGATGGCTTTGGTGTAGATGGTGCTAGTGCATACGAGATAGCATTAGAGAATGGTTTTGTAGGTAATATACAAGATTTCCTAGATAGCTTAGTAGGGGAACCGGGTAAAGATGGTCAAGATGGAAATGATGGACTATCTGCATATCAAATAGCATTAGAAAATGGATATACTGGAACAGAGAGTGAGTGGCTAGAAAGTCTTAACATTGATGTTGAAGTTGCTAAGGACTACACTGACTCAAAGCTAATTAGCATAGATGATAAAATAGCTTATGCTAGGACACGTTCTTTCAGAGATATTAAGATACACGCAGATTTACCGGCAGTATTTGAAGGATATCAAGCGTTATTAGAGGGGACTAGTTCAAACCATATTTATCCCCAGGGATTAGCAGTGGATAGTGATTATCTATACGTTTTATATTCCTATGATGATAAATCACCGGGCAAAGAAAAAATACTTATAGTGTATGCTAGAAAAGATGGATATAGACAACATTCTATGTATACTTTATCTAACGTAGCATCAGAGAGTATAGAAATTGAGTACACTTATTATGGTAGGTATTTGTATGCTAAAAGTGGTACAGACCAATTAGGTAAATACGATTTATCAGACTTGACGGGAATACCTAATACACCTACAAGATTAGAGCCAATGCAAACATATGACATACCGGTATTATATCAGTTTGCTAGATTTAAAAATGGTTGGATTTTTGAATTAGCTAATAACTCAAAAGGTTATTATAATCAAAGAGATACATTTGGACTTTATAATAAAAACCTTTCTGAAAAAACAAGTTACTTTACAACTCACGCATCTATAGGTAACCTATGGTCTAATTCACTAACTACTAAATCATCTAAAAGACAAGGATTAACAGTATTCAATAATAATATTCTACAGGCAGTAGGGGGTAATTATAACGTAGGAGATGATGTAGGTACCTATCACTTACAAGGAATACAAGAACTAAGTCCTAGTGGTGAAATAATAAATGATTATACTTATGACCCTAATGAGTTAGCCGATTTCCTTGGGTCACAAGGAAAAGATGTAAATAGAATTGAGCACGAGGGATTATATACAGATAAAGAGTATGATAAAAATAACGTATACTCAATTATAATATATAATACTACCATATCAAGAGAGGATTCAAATGAAAATGGTTTGTTATTTGTAGAATATAGACCTTATGAGCCAGACCATACATTTAAGCAACTAGGTAAGCCTTTCTTAACAAGTAATAGTTTATATAACCCTTACAAAAAGGTTGTAAGCAATAAATTAGTAAATGATTATACAGGTAAATCTATTGATAGTCTAAAAGAGTTAGCATTGTATATGATTGACTCATATCAAGATAAAGTGGTATTTTACTCTAGTTGGGTAGACATATTAGATTTAAGTAATGTTAAGATTGAAAATGGTATAAAAGTTACTTTGGAGAATTTAGATAATAAAGTTTTCTACTTATCATATGAAGATAACTTTGGTGTTGTTAAGAAAAAATTAACGGTTAATAAATCACAAGAAACAATAACAATAATAGATACTAGAAAAGAAAAATCTATAACTGGTACTGATTTACTAACATTAGATTATAATACATCATTCTATAGTATAGGTAGTGTTAACTCACCTAGTGGTGTACACGTAAATGGATTTGTCAAGTGTTATGTAAGTGACAATAATAGAATTTTAACTTATGAACCTTTTAATAGTAACGATACTTTTAAGAACATTTATAATTCCGGTTCTTGGAAAGGTTGGAAAAATTCAAATGTTAATATAGATACGATAGTAGCTCAAAAGCACGTCATTACTCAAGATAATGGAGATAGATTAAGAGTATCAGATGTAGACCCTATAACATTGAATACAGGATATTATCAAATATGGAAAATGAAAAACTCACCTGTTGGTTTTGATAGTAATGCTCAATATTGGAACGTAGATATCATAACAGCACAAGATAATGTAAAACAAATAAAAGCTACATTAAGTGCAACCGGTCAAGAGTATACAAGAACCATTCATAAGGGTAATGACTTAGGTTGGAAGTTTATAAACAATGAAAAGTATGGTAGAAATGATTTTAAACTGTACACAATTCCCCTTATGGCACCTTTTAACACTGCTAACTTATCAGTAATGGAAAATAATCATATAGTAACCGTTAGACTACAAGGTAAAGCTAATTCAAATACTAATAATATTTCAGATTTAGATGTTGTAATAGGTAAATTACCCGCACATATAGAGTACCCTAAAGATTTTGTTAGGTGTACAATATCTAGTATGACAAAAGGTGAAACAGAGCAATTCATAGGCAACCTAGTGATAGACACTAAAGGTATTATAACTGTTAAATTTAATAGGTCAGGTACTTCTAACTCTTACTTTGGTGGTTCATTATCATTCCCTAAAGGAGATAATAAAAACGTAGCGTTTAACTCAACAAATACTAAAGTGTATGACTATCCAGACCCTAATGTAGTATCTGTACAAGGTTCGGATTATTATGATGGGTATATATTTGGTGCTATAACTAGAACAAAAGGAAATGTAACCGAGATACAAGTTATAGATACTAATAATACAAGTAGTAGTTTCATATGTACCAATCAACAAGAGAATTTTAGTACTTTAGTAGGGCACGGTAATAGTTTAAAAGTAGTAGATAAGTTAAATGATGAGTACCTTATGTACATTACAATGACTGATGACCCTAAAATAGTACCTGTTTTTGTAAATACAACGACTAAGATTGCTAGGGTAGGAGAAGGAATAAAAACTATGCAAGATAGTGGAGGCTCTGAAAAGAGAATAATATCCATAGATAGAGTAGATAAGGTAGGAAGTACTTATGAATTATATTGTTTATGGTATGGTATAGAATTTAAATATACAATAAGTAACATAAATACAGTAGAGAGCTTAAAAGGAGAACAGGTATTTAAGTTACCATTAGAAAGAGTAATAGAAGATAAAAAAATGTTATTAAATGATGATAGTAATAGTATTAAGGTATATCAAGATAACCTCTTAGATGGAGATACATTCTATATAACACAATATGGTGAAAACAGTTCTGCAATACTAGAGTATAGAGTTGAAAATGCTATGGCAAAATCTACAGGTAAATACTGGTATAATTATAGGACTGATGCAGAAAGATATGAAATAGAAAGTATATTCAAAATAAATGGTGAATTATACGCATCTATTTCTCAAAAACTATTTAATAAAAGTACGTATGACACTTACGTCATAAAAGTAACATTGAACACCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
cd43ff050113de19b4ac47a7be44a0b01ee08d27131268b52a7cb67834c52303
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,7884
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Natural phage communities crosslink different species within the genus Staphylococcus Goller,P.C., Elsener,T., Lorge,D., Radulovic,N., Bernardi,V., Naumann,A., Amri,N., Khatchatourova,E., Hernandes Coutinho,F., Loessner,M.J. and Gomez-Sanz,E. 2024 — GenBank