Protein

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Genbank accession
YP_009853440.1 [GenBank]
Protein name
minor tail protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MNLPEIKQYRFDVSGTAKENLIPRELIPASDERNAKIVVPRHAPFFIESVHVYRAGHTIPLTLGEHYDFVSIDHDLSEYCGNRVSWVIRKLKNDLPDLEITYQTLGTIPALTETTKYWYEAAALDQRPVWFDQLLNKPKHFIPMLHGHDLAQGFFNFQRLIEIYEDRYETLFGDQALIPYREWFLGQLNNLKTYVEPFRLFLDRYTDNHINHDQDPHRTRSRDIPGLDQIDEVQTASNDEAQLGLSKRLRTVSAQAHNHIQQQGPDHEGHIPNIFLNEDGTRTASVIDNKKISPVTELTVGIKDLLVNAYVDRSGVGRGEITLTGSNGNKVLSFTNPNPVGQSRNPEPNIWYCDQQPTGYDIMIAGGNSDARVFYKDRWYLVIDNAELTEYDQLPSQRIAISGDMSDVLANHRDYRLIHTEEAVHLIRTTDHASKPTVIWKTIKYDKAAGTAEPVTEYTFKYNTINDGTSYNEKGRVIMFHRGFSSGKYSNGDLVFSEPVELVKRDAQVLVLPTVFKGKLYFEFLLPESFSYKGEERNYVHSHMAEANMNHVNKTVSLTWTDARARPYIVTERLFSANPEANNYFEQVAVPFPFELTSRRASLVAMSQEGFFGFGFKTEGHGEMFVVRFTPGDYTLNELGRLWHLADTEEWVVTRAGGCTPKTYNRVDVGHISPMNPYMGVWAESNERNRYGLVKGIHSEHGMGFFYKNLYGGVNEIKIGGTKVHTSLPLDNIDFVKHLTPEHWIGTSLDVEEQESEFVWSVGGSDSPSRLIPNRVGFGGSSFNPLSYVEVTDEFLTAMGVDLNGHWVLVLGGRYGLPDFIYNTYVENGSLKTKVQVFRLNSSVLTRVDGVKSRIPTTKLTAADKATLSGGRVVTHDTPAHLDLTKVENPEPTLDTNVINVLISDSGRTTVLLCPNNRFGNDSYSQTFPTVLNFNQADDSIVLFDEDQFEGCIGLSPDLGWVRTNFSDQTDFGGLVNAGEQLNSGYQARPSYIPSYSGLVGMFNMVPENEHQVYFPVPLLVLEGNTLHRLDATAFNTKHLITPGSTASYTLNLVNGLTGPYFDVDSHHALDEGWYIDVEETGVKLN
Physico‐chemical
properties
protein length:1086 AA
molecular weight: 122528,68750 Da
isoelectric point:5,39376
aromaticity:0,10773
hydropathy:-0,40018

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009853440.1
1 1086
Domain Start End Length (AA) Confidence
N-terminal 1 693 693 0,4729
Central domain 694 892 200 0,5310
C-terminal 893 1086 193 0,6376
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-693
Central
694-892
C-terminal
893-1086

Taxonomy

  Name Taxonomy ID Lineage
Phage Photobacterium phage PDCC-1
[NCBI] 		2664246 Uroviricota > Caudoviricetes > Chimalliviridae > Aphroditevirus > Aphroditevirus PDCC1
Host Photobacterium damselae subsp. damselae
[NCBI] 		85581 Pseudomonadota > Gammaproteobacteria > Vibrionales > Vibrionaceae > Photobacterium > Photobacterium damselae

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009853440.1 [NCBI]
Genbank nucleotide accession
NC_048821 [NCBI]
CDS location
range 90614 -> 93874
strand +
CDS
ATGAACCTCCCCGAGATTAAACAATATCGGTTCGATGTATCAGGTACAGCAAAAGAAAACCTAATACCTCGTGAACTGATCCCTGCAAGCGACGAACGTAATGCAAAGATCGTGGTCCCTAGACACGCACCTTTCTTTATTGAGTCGGTTCACGTCTATCGTGCAGGACACACTATTCCACTGACTTTAGGTGAACACTACGACTTCGTGAGCATTGATCATGACTTGTCAGAATACTGCGGTAATCGCGTATCCTGGGTCATTCGTAAATTAAAGAATGACTTACCTGATCTAGAAATCACCTATCAAACACTAGGTACTATCCCGGCATTAACAGAGACCACTAAATATTGGTACGAAGCTGCTGCGTTAGACCAACGACCAGTGTGGTTCGATCAATTACTGAATAAGCCAAAGCATTTCATTCCCATGTTACACGGTCATGACTTAGCTCAAGGTTTCTTCAACTTCCAACGATTAATCGAAATCTACGAAGATCGTTACGAGACGTTATTTGGTGATCAAGCATTAATCCCTTATCGTGAATGGTTCTTAGGTCAACTTAATAACCTTAAAACCTACGTAGAGCCTTTCAGACTGTTTTTAGATCGTTACACCGACAATCACATCAATCACGACCAAGATCCTCACAGAACACGTTCTAGAGACATTCCTGGGTTGGATCAAATTGATGAAGTGCAGACGGCTAGCAACGACGAAGCCCAATTAGGGTTAAGTAAACGACTACGAACAGTAAGTGCGCAAGCACATAATCACATCCAGCAACAAGGTCCTGATCACGAAGGACATATTCCCAACATCTTTCTGAACGAAGACGGAACGCGTACCGCTAGTGTCATCGATAACAAAAAGATTTCCCCGGTCACCGAACTGACTGTAGGAATTAAAGATTTGCTCGTTAATGCTTACGTTGATCGTAGCGGTGTCGGGCGAGGTGAGATCACACTAACGGGTTCTAATGGGAATAAGGTGTTGAGTTTTACCAACCCTAACCCAGTCGGACAGTCTCGTAACCCAGAGCCAAACATTTGGTATTGTGATCAACAACCTACTGGTTATGACATCATGATCGCTGGCGGCAATTCGGATGCTAGAGTCTTTTATAAAGACCGTTGGTACTTGGTTATCGATAATGCGGAGCTTACCGAATACGACCAACTCCCAAGTCAGCGTATAGCGATTTCAGGTGACATGTCCGACGTTCTGGCGAATCACCGTGATTATCGTTTGATTCATACCGAGGAAGCAGTACATTTAATTCGAACCACAGATCATGCTTCCAAACCAACGGTGATATGGAAAACGATCAAGTACGATAAAGCGGCAGGTACCGCAGAACCTGTGACTGAATACACGTTTAAATACAACACCATCAATGATGGTACTTCTTATAACGAGAAGGGACGTGTTATTATGTTCCACCGTGGCTTCAGTTCAGGTAAGTACTCTAACGGTGACCTGGTGTTCTCTGAACCAGTGGAATTAGTCAAACGTGACGCCCAAGTCTTGGTACTCCCTACGGTCTTTAAAGGCAAGCTTTATTTTGAGTTCTTACTCCCAGAGTCGTTCAGCTATAAAGGTGAAGAACGAAATTACGTTCACTCTCACATGGCCGAAGCCAACATGAACCATGTTAATAAGACTGTGTCTTTAACCTGGACTGACGCTCGAGCAAGACCGTATATTGTTACGGAGCGTTTGTTCTCGGCTAACCCGGAAGCAAACAACTACTTTGAACAAGTCGCTGTCCCATTCCCATTCGAACTAACAAGTCGTCGGGCTTCTTTAGTCGCTATGTCCCAAGAAGGATTCTTTGGATTTGGGTTTAAAACAGAAGGTCACGGTGAAATGTTTGTTGTTCGTTTTACCCCGGGCGATTACACTTTAAATGAACTTGGTCGATTATGGCACCTGGCGGATACGGAAGAATGGGTGGTGACTCGAGCAGGTGGTTGCACTCCTAAAACCTATAATCGAGTTGACGTGGGACATATCAGTCCTATGAACCCTTACATGGGTGTATGGGCGGAATCTAATGAACGTAACCGTTACGGGTTAGTTAAAGGCATACATTCTGAACACGGTATGGGTTTCTTTTATAAGAACCTTTACGGGGGAGTGAATGAAATCAAGATTGGTGGAACTAAAGTTCATACTAGTTTGCCACTCGACAACATTGATTTTGTCAAACACTTAACTCCTGAACACTGGATTGGGACCTCCCTAGATGTGGAAGAACAAGAAAGTGAGTTCGTGTGGTCTGTGGGTGGGTCAGATTCCCCTTCCAGACTTATCCCTAACCGAGTTGGATTTGGTGGTAGTAGCTTTAATCCACTAAGCTACGTGGAAGTCACTGACGAGTTCTTGACCGCCATGGGGGTGGACCTTAACGGGCATTGGGTGCTGGTCCTAGGTGGACGTTACGGACTCCCTGATTTCATTTATAACACTTATGTGGAAAATGGTAGTCTGAAAACGAAAGTTCAAGTATTTCGTTTAAACTCTTCGGTACTGACAAGAGTGGATGGCGTGAAATCACGCATTCCAACTACTAAGTTAACCGCAGCTGATAAAGCCACCCTAAGTGGGGGACGTGTAGTGACCCACGACACACCCGCTCATTTGGATCTGACTAAAGTAGAGAACCCAGAGCCAACATTGGACACTAACGTAATCAACGTGTTAATTAGTGACTCCGGTCGCACTACGGTTTTACTGTGTCCTAACAACCGATTTGGTAATGACTCCTACAGTCAAACGTTCCCCACTGTATTAAACTTCAATCAAGCTGATGACAGCATTGTATTATTTGATGAAGATCAGTTCGAAGGATGCATCGGTCTCTCTCCCGACCTTGGTTGGGTTAGAACCAACTTTAGTGATCAAACTGATTTTGGTGGTCTGGTCAACGCCGGGGAACAATTAAACTCAGGTTACCAAGCTCGACCTTCTTATATCCCTAGCTATAGTGGTTTAGTAGGTATGTTCAACATGGTGCCTGAAAATGAACACCAAGTTTACTTCCCTGTGCCTTTGTTGGTATTAGAAGGTAACACTCTGCATCGACTTGATGCAACGGCGTTTAACACCAAGCATTTGATTACTCCTGGTTCCACTGCAAGCTACACACTCAATTTGGTCAACGGACTTACCGGGCCTTACTTTGATGTGGATTCGCACCATGCACTGGACGAAGGTTGGTATATTGATGTCGAAGAAACCGGTGTGAAATTAAATTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
7d16c12d36205f018735a5e98d14fa3ac648ecb6d9e12225712a627448ea9c51
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,2712
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Draft genome sequence of Photobacterium phage PDCC-1 Quiroz-Guzman,E. 2021-10-07 — GenBank