Protein

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Genbank accession
AYP29514.1 [GenBank]
Protein name
baseplate component protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MAEFWSNNDRGYRIRLWVDQVSQDKVANTSQVRFQLALLNTTTTFAQYQCSAYIDFEGQRLNWSGSPSVLGWYQTIPLIDQTVTINHDSDGKKTFSFSAQFNGGGGWSPRTLTISGISFTLTDIPRLSSVSVDAGTIGSSVTININRQSSSFKHTVRYAWANKSGTIASNVDTSTTWTIPLDFANDFPNSETGTGTIYVDTYSEGTMIGTQSATLTASVPASMKPTFTGISLSDSNTAARNVVQNANTFIQIMSNIKVSFNGASGSYGSNITGYRAEIVGKNQTTNVNGGTLGIMNYNGTITVRASVSDSRGRWSDTRDVTVTVLEYFAPSLKIDVKRVGETSSTLEIIRNAQIAPLNINGIQKNTMKLTFKVSPNGKDDYTTDTGPASGEWLSISSLVNSPANLAGIYAANKSWEVLAILEDKFTSTSFKAQVPVESVVLSYDRDGLGIGKIREFGALDVAGDIYANNSQIQQYQLTSNNGGPKGNVDNANNLYEPGQYCLGPSAPGNPNGQWGFLFHYSYNGNNTDGIKEAIQTFWSNNGQMFFRHHRWSKIIDDWEPWIDYTPKKEKPVVKKEIEIGWFLKANIVRKSNVVTLSLIRDVHTVPPGEYRSLDEKIPYGFRPCVQTHLVANKNSGWIHNGCAVWHLESSGDMFYSNPSADNAIYTGTVTYITEDEYPNN
Physico‐chemical
properties
protein length:680 AA
molecular weight: 74755,15400 Da
isoelectric point:6,04655
aromaticity:0,10588
hydropathy:-0,37515

Domains

Domains [InterPro]
IPR008577
STR
1–633
IPR008577
AYP29514.1
1 680
Architecture
STR
STR 1-633 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AYP29514.1
1 680
Domain Start End Length (AA) Confidence
N-terminal 1 123 123 0,0009
Central domain 124 322 200 0,5452
C-terminal 323 680 357 0,7625
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-123
Central
124-322
C-terminal
323-680

Taxonomy

  Name Taxonomy ID Lineage
Phage Streptococcus phage SW13
[NCBI] 		2419633 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Streptococcus thermophilus
[NCBI] 		1308 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Lactobacillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AYP29514.1 [NCBI]
Genbank nucleotide accession
MH892362 [NCBI]
CDS location
range 20884 -> 22926
strand +
CDS
TTGGCAGAATTTTGGAGTAATAATGATAGAGGCTATAGGATTAGATTATGGGTTGACCAGGTTAGCCAAGACAAAGTAGCTAATACCAGTCAGGTCAGATTTCAACTAGCACTGCTAAATACGACTACGACTTTTGCTCAATATCAATGTAGCGCTTATATCGATTTCGAAGGACAAAGATTGAATTGGTCTGGTTCACCTAGTGTATTAGGGTGGTATCAAACAATTCCATTGATAGATCAAACAGTTACTATTAATCACGATTCCGACGGTAAAAAGACTTTTTCTTTTTCAGCGCAGTTTAATGGCGGTGGAGGTTGGAGTCCTCGTACATTAACAATCAGTGGTATCTCATTTACACTAACCGACATTCCACGGTTAAGCTCTGTCAGCGTTGATGCTGGTACTATTGGTAGCTCAGTCACTATTAACATCAACCGTCAAAGCTCTAGTTTTAAGCACACAGTACGTTATGCTTGGGCCAATAAGTCAGGGACTATTGCAAGTAATGTAGACACATCTACAACATGGACTATCCCACTTGACTTTGCTAACGACTTTCCAAACTCGGAAACGGGTACGGGAACAATCTACGTAGATACCTACTCAGAAGGAACCATGATAGGGACACAGTCAGCTACACTGACAGCAAGTGTGCCAGCTAGCATGAAACCAACTTTCACAGGGATTTCTTTATCAGACTCTAACACAGCTGCTCGGAACGTGGTACAAAACGCTAACACATTCATCCAGATTATGTCTAACATCAAGGTATCCTTCAATGGTGCAAGTGGGTCTTATGGTTCAAATATCACGGGCTACCGTGCTGAGATAGTCGGTAAGAACCAGACTACCAACGTCAATGGTGGCACGCTGGGTATCATGAACTACAACGGAACCATCACAGTCAGGGCAAGTGTATCTGATAGTCGTGGGCGTTGGTCTGATACTAGAGATGTCACAGTTACTGTACTTGAGTATTTTGCCCCATCTCTTAAAATTGACGTAAAACGCGTTGGTGAAACATCTAGCACATTAGAAATTATAAGAAATGCACAGATAGCCCCTTTGAATATTAATGGTATTCAAAAAAACACCATGAAATTAACTTTCAAGGTGTCTCCTAATGGAAAAGATGATTACACAACGGACACTGGTCCTGCCTCTGGTGAATGGTTAAGCATTTCAAGCCTTGTCAATTCACCTGCTAATTTAGCTGGTATATATGCAGCTAATAAATCGTGGGAAGTTTTGGCAATTTTGGAAGACAAATTCACATCCACGAGCTTTAAGGCACAAGTTCCTGTTGAAAGTGTTGTGCTATCCTATGACCGTGATGGTCTTGGTATTGGTAAAATACGTGAGTTTGGCGCTCTTGACGTGGCTGGCGACATTTACGCTAACAACAGTCAGATTCAACAATATCAGCTAACCAGTAATAACGGTGGTCCCAAAGGGAATGTTGACAATGCAAACAACCTTTATGAACCGGGACAATACTGCCTTGGCCCATCGGCACCGGGAAATCCTAATGGTCAGTGGGGGTTTCTATTCCATTACAGCTACAATGGAAATAATACTGACGGTATAAAAGAAGCCATCCAGACATTCTGGAGCAACAACGGTCAGATGTTTTTCAGGCATCACCGATGGTCGAAGATAATCGACGATTGGGAACCGTGGATTGATTACACACCTAAGAAAGAGAAACCTGTTGTTAAGAAAGAAATCGAGATTGGATGGTTTTTGAAGGCAAACATCGTAAGGAAATCAAATGTAGTAACTCTCAGCTTGATAAGGGACGTACATACTGTACCACCAGGAGAGTACAGGAGTTTGGATGAGAAAATTCCATACGGGTTCAGACCTTGCGTACAGACACATTTGGTTGCTAACAAAAACTCAGGATGGATTCATAATGGTTGTGCGGTATGGCATCTTGAATCTAGTGGGGATATGTTTTATTCAAATCCTAGTGCAGATAACGCTATATACACTGGAACAGTAACTTACATAACTGAAGACGAATATCCAAACAATTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
5a8d3ebdca76c06f248cd0fdb0a58940564585f35f815f740b76f610acb3c491
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8835
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Biodiversity of Streptococcus thermophilus Phages in Global Dairy Fermentations Lavelle,K., Martinez,I., Neve,H., Lugli,G., Franz,C., Ventura,M., Bello,F., Sinderen,D. and Mahony,J. 2018 — GenBank