Protein

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Genbank accession
QGZ18225.1 [GenBank]
Protein name
tail spike protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence RBPdetect
Probability 0,73
TF
Evidence RBPdetect2
Probability 0,69
Protein sequence
MAQHDYIISNQTFPNTRADINNALLAISSNNSGTSAPTTQYAGQFWLDTNTPSSTTWSLYIHDGSDDILFAQIDTSANTVNFLDSALADDVVISTSGAVSTTGAFTANGTIKLDGNYPTGTGNVALGDAALDSGSLSGGCNTAVGNAVLTDNTSGSQNVGIGHVALTANTTGVRNTAIGTFSLDANISGDFNTALGRSSLGSNTTADNNTAVGFESLKANTTGADNTAVGSNSLDANTTGGQNVAIGKCALVTNTTASNNVAIGEIALRVNTTGANNTAIGRAALTANTTAAGSVAVGYNALTAHTTGGCNTAVGCNAGGAITTGTCNVAIGRATLPNNTTASNNTAIGTSALNQNTTGTENTMVGANSGDAITTGHSHTALGFCALTTNTTTEGNTAIGHSSMKLTTTGGDNTALGRRSLCKNTTGGNNTSVGAYNMTSNTTGAGNVSVGIQALCSNTTASNNVAVGINSSLANTTGAANVAIGCNAMKSNTTAGSNTAVGKDSLCVNQTGNFLVAVGQSALRNSTGSCNAAVGSDALFENGSGSRNTAFGHNALNKTTTGECNHASGVFAGCANTTGFRNTYVGYGAGQNATTPEGNTFVGRLAGCNAGTGNSNTALGISAGIDAVKNISGTDTHQLVLGNNGTTNAYMKVAFTVTSDLRDKTEIEDVPHGLDFVSKLNPIKYRFKVSREDPVGTGMKKYGFSAQEILELEGDNNVIIDNHDTENLKLTELHLIPVLVNAIKELTARVKELENN
Physico‐chemical
properties
protein length:756 AA
molecular weight: 76128,22630 Da
isoelectric point:5,20386
aromaticity:0,04233
hydropathy:-0,15847

Domains

Domains [InterPro]
DC_1779
STR
8–232
DC_1779 DC_2098 DC_1422
IPR011049
STR
167–320
IPR011049 IPR011049 IPR036388 Coil
DC_2098
STR
360–476
DC_2098 IPR030392
IPR030392
CHP
659–756
IPR030392
QGZ18225.1
1 756
Architecture
STR
STR
STR 8-476 | STR 509-756
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QGZ18225.1
1 756
Domain Start End Length (AA) Confidence
N-terminal 1 109 109 0,1090
Central domain 110 604 496 0,8981
C-terminal 605 756 151 0,9759
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-109
Central
110-604
C-terminal
605-756

Taxonomy

  Name Taxonomy ID Lineage
Phage Pelagibacter phage HTVC112P
[NCBI] 		2686462 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Candidatus Pelagibacter sp. HTCC7211
[NCBI] 		439493 Pseudomonadota > Alphaproteobacteria > Candidatus Pelagibacterales > Candidatus Pelagibacteraceae > Candidatus Pelagibacter >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QGZ18225.1 [NCBI]
Genbank nucleotide accession
MN698246.1 [NCBI]
CDS location
range 26168 -> 28438
strand +
CDS
ATGGCACAGCACGATTATATAATTTCAAACCAAACTTTTCCAAATACTAGAGCAGATATTAACAATGCTCTATTAGCAATTTCAAGTAATAACTCAGGAACATCAGCACCTACTACTCAATATGCTGGTCAATTCTGGTTAGATACAAACACTCCATCATCAACAACATGGAGTTTATATATACATGATGGTTCAGATGATATTTTATTTGCACAAATAGATACATCAGCAAACACAGTAAATTTTTTAGATTCAGCTTTAGCAGATGATGTTGTTATTAGTACATCAGGTGCAGTTTCAACAACAGGTGCTTTTACTGCAAATGGAACAATAAAATTAGATGGTAACTATCCAACAGGAACAGGTAACGTTGCATTAGGAGATGCTGCTTTAGATAGTGGTTCTTTATCAGGTGGTTGTAATACAGCTGTTGGAAATGCTGTATTAACAGATAATACATCAGGTTCTCAAAATGTTGGAATTGGACATGTAGCATTAACAGCTAATACAACTGGTGTTCGTAATACAGCAATTGGTACATTTTCTTTAGATGCAAATATATCTGGAGATTTTAACACAGCTTTAGGAAGGTCATCTTTAGGATCAAACACTACAGCAGACAATAACACAGCAGTTGGTTTTGAATCTTTAAAAGCTAACACAACAGGTGCAGACAATACGGCAGTAGGATCAAATTCTTTAGATGCAAATACAACAGGTGGACAAAATGTTGCAATTGGAAAATGTGCTTTGGTTACAAATACCACTGCTTCAAATAATGTAGCAATAGGAGAAATAGCATTAAGAGTAAATACTACAGGTGCAAATAATACAGCAATCGGTAGAGCTGCTTTAACTGCAAACACGACAGCAGCTGGAAGTGTAGCAGTAGGTTACAATGCTTTAACTGCACATACAACAGGTGGATGTAATACAGCAGTTGGCTGTAATGCTGGTGGTGCTATAACAACAGGAACTTGTAATGTAGCAATAGGTAGAGCAACACTTCCTAATAATACAACAGCTTCAAACAATACAGCAATTGGAACAAGTGCTTTAAATCAAAACACAACAGGAACAGAAAACACAATGGTTGGTGCTAATTCTGGAGATGCTATTACAACAGGTCATAGTCATACTGCTTTAGGATTTTGTGCTTTGACAACTAACACCACAACAGAGGGTAATACTGCAATAGGTCATTCTTCTATGAAACTTACTACAACTGGAGGAGACAACACTGCATTAGGTAGAAGATCATTATGCAAAAATACAACAGGTGGTAATAACACATCAGTTGGTGCTTATAATATGACAAGTAATACAACTGGTGCTGGTAATGTCTCTGTAGGTATTCAGGCTTTATGTTCAAACACTACAGCAAGTAACAATGTTGCAGTCGGAATAAATTCTTCATTAGCTAACACAACAGGTGCTGCTAATGTAGCAATTGGTTGCAATGCTATGAAATCAAATACAACAGCAGGTTCAAATACAGCAGTTGGTAAAGATTCATTATGTGTAAATCAAACAGGAAATTTTTTAGTTGCAGTAGGTCAATCGGCATTAAGAAATAGCACAGGAAGTTGTAATGCAGCAGTTGGTTCCGATGCCTTATTTGAAAACGGTTCAGGATCAAGAAATACTGCGTTTGGACACAATGCACTTAATAAAACTACTACAGGAGAATGTAATCATGCTTCAGGTGTATTTGCTGGATGTGCAAATACAACAGGTTTTAGAAACACTTATGTAGGATATGGTGCTGGTCAAAATGCTACTACACCAGAGGGTAATACATTTGTTGGAAGATTAGCTGGTTGTAATGCTGGAACAGGAAATAGTAATACTGCTCTAGGAATTAGTGCTGGTATAGATGCAGTTAAAAATATTTCAGGAACAGATACTCACCAACTAGTTTTAGGTAATAATGGAACTACTAATGCTTATATGAAAGTTGCTTTTACAGTTACTTCTGATTTAAGAGATAAAACTGAAATTGAAGATGTGCCTCATGGTTTAGATTTTGTTAGTAAATTAAATCCAATAAAATATAGATTTAAGGTATCAAGAGAAGACCCTGTTGGTACAGGTATGAAAAAATATGGTTTTTCTGCTCAAGAAATTTTAGAACTTGAGGGAGATAATAATGTTATTATAGATAACCATGACACAGAAAATTTAAAACTAACTGAACTACATTTAATCCCAGTATTAGTTAATGCAATTAAAGAATTAACAGCAAGAGTAAAAGAATTAGAAAATAATTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
a5c1f2d3d2d09171b803b957571478f63c84fd98cb6eb18d6ed621a32eccb0bf
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8542
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Novel pelagiphages prevail in the ocean Zhang,Z., Qin,F., Chen,F., Chu,X., Luo,H., Zhang,R., Du,S., Tian,Z. and Zhao,Y. 2019 — GenBank