Protein

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Genbank accession
XWX36368.1 [GenBank]
Protein name
pre-neck appendage protein
RBP type
TF
Evidence RBPdetect
Probability 0,62
TF
Evidence RBPdetect2
Probability 0,79
Protein sequence
MTNNHAMISGITANNYSTPAWIAGEKYDTPPTVGKGGASIASTGSAGVANASAVIASTGGSKAYSNRSFVLGSGANSKSYGSRSGIINSLNSETDKKGHTQLIMNSNRVKSPGNYHVVAGYGSSGNASTSNIKFDLSTYSGNLTLAGQLKQDSADIAELFESQNGLAIDLGTIVTLDGDKIRKAQPNDTPIGVISGTAALVANEKTFHHKDRFLKNEYGVTITNRKQVEFVDDEGNVSFEWRDIPVENPEYNDKIDYQSRSERPEWNVVGLLGQIYTNIEKDVIPGDYINGRAGVGYKDNVNGKGRVMKITSEYTEERGCAIALVLWGAK
Physico‐chemical
properties
protein length:330 AA
molecular weight: 35275,64040 Da
isoelectric point:6,24163
aromaticity:0,07576
hydropathy:-0,45667

Domains

Domains [InterPro]
DC_0616
STR
1–101
DC_0616 IPR021865
G3DSA:2.160.10.20
RBD
28–150
G3DSA:2.160.10.20 G3DSA:2.40.300.10
G3DSA:4.10.80.40
RBD
208–255
G3DSA:4.10.80.40
XWX36368.1
1 330
Architecture
STR
RBD
STR 1-101 | RBD 102-326 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Staphylococcus phage PG-2021_90
[NCBI] 		2815642 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Staphylococcus epidermidis
[NCBI] 		1282 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Bacillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XWX36368.1 [NCBI]
Genbank nucleotide accession
MZ417351 [NCBI]
CDS location
range 43367 -> 44359
strand -
CDS
TTGACAAATAACCACGCTATGATTAGTGGTATCACAGCAAACAATTATTCAACACCTGCATGGATAGCCGGCGAAAAATACGACACACCTCCTACAGTTGGAAAAGGCGGCGCTAGTATAGCGTCTACAGGAAGTGCTGGTGTAGCAAACGCTAGTGCAGTTATTGCATCTACAGGTGGTTCGAAAGCATACAGTAATCGTAGCTTTGTATTAGGTTCTGGTGCTAACTCCAAATCTTATGGTTCACGTAGCGGTATTATCAATTCACTTAATTCTGAAACTGATAAAAAAGGCCATACACAACTGATTATGAATAGTAATCGTGTTAAGTCACCTGGTAACTATCATGTTGTCGCTGGATATGGTTCTAGTGGTAATGCTTCTACATCTAACATTAAATTTGATTTAAGCACTTATTCAGGAAACTTAACTTTAGCCGGTCAACTTAAACAAGATAGTGCCGATATCGCAGAGTTATTTGAGTCACAAAATGGATTAGCAATCGATTTAGGAACTATCGTTACATTAGACGGCGATAAGATAAGAAAAGCGCAACCTAATGACACACCAATTGGCGTTATATCTGGAACTGCCGCGTTGGTAGCGAACGAAAAAACGTTCCACCACAAAGATAGATTTCTTAAAAACGAATATGGTGTGACTATCACGAATAGAAAACAAGTTGAATTTGTAGATGATGAGGGCAACGTTTCTTTCGAATGGCGTGACATACCAGTAGAAAACCCTGAATATAACGACAAAATCGATTATCAATCACGTTCAGAAAGACCTGAATGGAATGTAGTCGGATTATTAGGTCAAATCTACACAAACATTGAGAAAGACGTTATACCAGGCGACTATATCAACGGTAGAGCAGGTGTAGGATATAAAGATAATGTGAATGGTAAAGGCAGAGTCATGAAGATAACTTCTGAATACACTGAAGAACGTGGCTGTGCAATAGCATTAGTATTGTGGGGTGCTAAATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
57cc3f0cd7eb0fb23ec263bd5018a22bfda13205c2f61c51a5d8b03e38974220
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,9303
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Natural phage communities crosslink different species within the genus Staphylococcus Goller,P.C., Elsener,T., Lorge,D., Radulovic,N., Bernardi,V., Naumann,A., Amri,N., Khatchatourova,E., Hernandes Coutinho,F., Loessner,M.J. and Gomez-Sanz,E. 2024 — GenBank