Protein

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Genbank accession
XPN40560.1 [GenBank]
Protein name
structural protein
RBP type
TSP
Evidence RBPdetect
Probability 0,89
Protein sequence
MAYATENYGSTRAELIAALKNRFEAAGYEVAGHDGEYLCIKLAADLFIEYRCTYFQYVTRSGRQRYTNAIHWEMGTSHSGARVAGTRSPDEGQGTNYSGWTGPLQHVPLPGKLHFCKTDVAGKNDFIFCVENPADGKGASFLGAELACVDAQFGAHSHFYLAGHCADSGRDDSTNSGPFHHTDSYNGCGFIRRQNADGSFNTYETAGYGPNSTSADYNTINSFLSTGTNGFYSGIDTGLYFSPSLTTILLPAIWGCVQPKQSSPSPGRYGAPPKGDFPQFKICSMSYAGIGEQLTLDGKTYRLFPRIGKGGSNTAGFAIRES
Physico‐chemical
properties
protein length:322 AA
molecular weight: 34762,01030 Da
isoelectric point:6,35405
aromaticity:0,12733
hydropathy:-0,41925

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XPN40560.1
1 322
Domain Start End Length (AA) Confidence
N-terminal 1 10 10 0,0052
Central domain 11 209 200 0,0046
C-terminal 210 322 112 0,9983
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-10
Central
11-209
C-terminal
210-322

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage PVA1_EC2022
[NCBI] 		3389921 Viruses >
Host Vibrio alginolyticus
[NCBI] 		663 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XPN40560.1 [NCBI]
Genbank nucleotide accession
PQ582221 [NCBI]
CDS location
range 11995 -> 12963
strand +
CDS
ATGGCTTACGCTACTGAGAACTACGGGTCTACGAGGGCAGAACTCATAGCCGCACTCAAGAATCGCTTTGAGGCAGCTGGCTATGAGGTAGCTGGTCATGATGGCGAGTACCTGTGCATAAAGCTCGCGGCTGACCTATTCATTGAGTATCGCTGCACGTACTTCCAGTACGTCACTAGATCAGGTCGTCAGCGATACACTAATGCGATCCACTGGGAGATGGGCACTTCTCATAGCGGTGCTCGTGTGGCTGGCACTAGAAGTCCAGATGAGGGGCAGGGAACGAATTATTCTGGGTGGACAGGACCTCTACAACATGTCCCACTACCGGGCAAACTGCACTTCTGCAAAACGGATGTTGCTGGGAAGAACGATTTCATATTCTGCGTTGAGAATCCAGCAGACGGGAAGGGAGCCTCCTTCCTTGGGGCGGAGTTAGCCTGTGTAGATGCCCAGTTCGGGGCACACAGCCACTTCTACTTAGCAGGGCACTGTGCTGACAGCGGTAGGGATGATAGCACTAACTCTGGACCCTTCCACCACACGGACTCGTACAATGGCTGTGGATTTATACGCCGTCAGAACGCAGACGGGTCATTCAACACCTATGAGACGGCTGGTTACGGTCCTAACAGCACTTCAGCGGACTACAACACTATCAACAGCTTCCTGTCCACAGGCACGAATGGGTTTTACTCCGGGATTGATACAGGTCTGTATTTCTCTCCGTCGCTGACCACGATCCTCCTCCCGGCTATATGGGGGTGTGTGCAGCCTAAGCAGTCTTCCCCGTCACCCGGTAGATACGGAGCACCGCCCAAAGGTGACTTCCCGCAGTTCAAGATCTGCTCAATGTCCTATGCGGGAATAGGAGAGCAACTTACGCTTGATGGGAAGACCTACAGACTGTTTCCAAGGATCGGGAAGGGTGGTAGTAACACTGCTGGCTTTGCAATAAGGGAGAGTTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
4006798ade4d749ece479bcd5cb274de57fff316aac4312940bfd25c38b7e982
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6750
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Phage-infection dynamics on Vibrio spp. biofilm disruption Nolivos-Rodriguez,K., Cueva,D.F., Jara-Medina,N., Endara,D., Feijoo,M., Vargas,D., Aguilera-Pesantes,D., Vizuete,K., Debut,A., Melo,L.D.R. and Machado,A. 2021-06-16 — GenBank