Protein

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Genbank accession
XOD32561.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence RBPdetect
Probability 0,87
Protein sequence
MFRGNTTGISSVDNMTISVWGNTFTNPSVGNRKNVMEISDPTSWMSYIQRLTTGEVEMNVNGSFESSGVTAGDRGVHTTGEISSGAVNALRIWNADYGAIFRRSENSLHIIPTAYGEGKNGDIGPLRPFSMSLDTGKVVIPDLDLSYASFAANGYIKFGGHGAGAGGYDIQYVQAAPVFQEIDDDAISKYYPIVKQKFLNGKAVWSLGTEFNSGTLVLHHLKEDCPQGHTSRFNADGTVNFPDNVQVGGGEATIARNGNIWSDIWKSFTSAGDTTIIRDAIATRVSKEGDTMTGKLTLSAGNDALVLTAGAGASSHIRSDVGGTGNWYIGKGGGDNGLGFYSYITQGGVYITNNGEISLSPQGQGTFNFNRDRLHINGTQWVAHKSGIWDDQWGLEAPIFVDF
Physico‐chemical
properties
protein length:403 AA
molecular weight: 43157,19270 Da
isoelectric point:5,25473
aromaticity:0,10174
hydropathy:-0,28462

Domains

Domains [InterPro]
DC_0932
STR
1–240
DC_0932 G3DSA:6.20.80.10
IPR048390
ATT
30–129
IPR048390 DC_0339
XOD32561.1
1 403
Architecture
STR
ATT
STR
STR 1-29 | ATT 30-129 | STR 130-403
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XOD32561.1
1 403
Domain Start End Length (AA) Confidence
N-terminal 1 34 34 0,0775
Central domain 35 236 203 0,3695
C-terminal 237 403 166 0,7670
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-34
Central
35-236
C-terminal
237-403

Taxonomy

  Name Taxonomy ID Lineage
Phage Shigella phage sb4
[NCBI] 		3387549 Viruses >
Host Shigella flexneri
[NCBI] 		623 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XOD32561.1 [NCBI]
Genbank nucleotide accession
PQ666542 [NCBI]
CDS location
range 158611 -> 159822
strand +
CDS
ATGTTTAGAGGTAACACGACTGGTATTAGTTCAGTTGATAATATGACAATTTCTGTATGGGGTAATACGTTTACTAATCCTAGTGTAGGTAATCGTAAAAATGTCATGGAAATTTCTGACCCAACTAGTTGGATGAGCTATATTCAAAGACTTACTACTGGCGAAGTAGAAATGAACGTTAATGGTTCATTTGAATCATCTGGTGTTACTGCTGGAGATAGAGGAGTTCACACAACAGGTGAAATTTCATCTGGAGCGGTGAATGCGCTTCGCATTTGGAACGCAGATTATGGTGCCATTTTCCGTCGTTCAGAAAACAGTCTTCATATTATTCCAACTGCCTATGGTGAAGGCAAAAATGGCGATATCGGTCCACTTCGTCCATTTAGTATGTCTTTAGATACAGGTAAGGTCGTTATTCCTGATTTAGATTTAAGTTATGCTTCTTTTGCCGCAAATGGTTATATTAAATTCGGCGGTCATGGCGCTGGCGCTGGCGGTTATGATATTCAGTATGTTCAAGCAGCTCCTGTTTTCCAGGAAATTGATGATGATGCTATAAGTAAATATTATCCTATTGTTAAACAGAAGTTTTTAAACGGTAAAGCTGTTTGGTCTTTAGGTACTGAATTTAATTCAGGTACACTTGTTTTACATCATTTAAAAGAAGATTGTCCACAAGGCCATACATCAAGATTTAATGCTGACGGTACAGTTAATTTCCCTGATAATGTTCAGGTTGGCGGTGGTGAAGCTACTATTGCTCGAAATGGTAATATCTGGTCTGATATTTGGAAATCGTTTACTTCAGCAGGAGACACTACAATTATTCGTGATGCAATAGCTACTCGTGTTTCTAAAGAAGGCGATACGATGACCGGTAAGTTGACTTTATCTGCTGGAAATGATGCCCTTGTTTTAACTGCAGGCGCGGGTGCTTCATCGCACATCCGTAGTGATGTAGGTGGTACAGGTAACTGGTATATAGGCAAAGGCGGCGGCGATAATGGTCTAGGTTTTTATAGTTACATTACACAAGGCGGTGTATACATAACAAATAACGGCGAAATATCGCTTTCTCCTCAAGGTCAAGGAACATTTAATTTTAATAGAGACCGCCTTCATATAAACGGTACACAATGGGTTGCGCATAAATCTGGCATCTGGGATGACCAATGGGGTTTAGAAGCTCCGATATTTGTAGATTTTTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
830af25516d44566396339d6c12b890e3b42fba00baafa03b926c8d255af870f
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6276
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50