Protein

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Genbank accession
WPK32966.1 [GenBank]
Protein name
tail spike protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MLNLTKVATWLVNWKASATGAVERTMESKLMDNISVADFGAIPGNTDSRAAFQAAINHAHSLGGGAVTVPSGTWTLKGSLTFYNNVHLVGAGQGSTVLLYSAINVPFAAIGTASTNINNVHIRDLQIIVDGTHTRGDFITWTNGYNLCLENVRVDGPFYNFLKMHGGPQQFIYRVNNCTINGATTSEDVIVIGDTSSAVVQDVFLQNLVLSGGGKGCGVKEVNASGVYASNIDCLGMKYGYAWLPSGATKCRGSFYTAILGDTCKECGLMFAPMGGASVSDLNFNGCWGSSCGTTALHPGVHLNAENGGLENLNFNGLTCVNNKGSGILLTGYSVGGINFSNISCNANSMATRGQKHGIELGAGVQNVNFTNVKAGATPVFEFNNQGYGIFISDGIGSGVKFVNVDARGNVNGAISNASDAAVTIENCPQYVTYNTGAAKMASGTNSVTVPTGISRALQGRYVQVTPTTDINAPFWFEVSGQNIIIRVRNNVSGDHYFGWTVSAQR
Physico‐chemical
properties
protein length:506 AA
molecular weight: 53167,09680 Da
isoelectric point:6,77779
aromaticity:0,08893
hydropathy:0,03320

Domains

Domains [InterPro]
IPR012334
STR
5–493
IPR012334
IPR011050
STR
25–378
IPR011050 DC_2130
IPR051801
Unmapped
33–88
IPR051801
IPR011050
STR
33–378
IPR011050
IPR024535
ENZ
34–233
IPR024535
WPK32966.1
1 506
Architecture
STR
RBD
STR 5-493 | RBD 494-505 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
WPK32966.1
1 506
Domain Start End Length (AA) Confidence
N-terminal 1 43 43 0,9322
Central domain 44 430 388 0,9926
C-terminal 431 506 75 0,9910
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-43
Central
44-430
C-terminal
431-506

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage AV102
[NCBI] 		3077248 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Escherichia coli
[NCBI] 		562 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WPK32966.1 [NCBI]
Genbank nucleotide accession
OR352933.1 [NCBI]
CDS location
range 1158 -> 2678
strand -
CDS
ATGCTAAATCTTACCAAAGTGGCTACATGGTTAGTTAACTGGAAAGCGTCTGCAACAGGTGCAGTTGAACGTACCATGGAGTCTAAACTAATGGATAACATTAGTGTTGCAGACTTCGGAGCTATTCCAGGTAATACTGACTCACGAGCTGCCTTCCAAGCCGCGATTAATCACGCTCACAGCCTAGGAGGAGGGGCCGTAACTGTACCTTCTGGTACATGGACTTTAAAGGGCTCTCTTACATTCTATAATAATGTGCATTTGGTGGGAGCAGGACAGGGCAGCACTGTACTTTTATACTCTGCAATTAACGTGCCTTTTGCAGCCATCGGTACAGCATCTACCAATATTAATAATGTTCATATCCGTGACCTACAAATTATTGTGGATGGGACACATACGCGCGGCGACTTCATTACGTGGACTAACGGATACAACTTATGCCTGGAGAATGTTCGTGTAGATGGTCCCTTCTATAACTTCCTTAAGATGCACGGCGGTCCCCAGCAGTTTATTTACCGCGTAAACAACTGTACCATTAACGGTGCAACTACTAGCGAAGATGTTATTGTGATAGGCGATACCTCTTCGGCTGTAGTTCAGGATGTGTTCCTGCAGAACCTAGTACTGTCAGGAGGTGGTAAAGGATGTGGGGTTAAGGAGGTCAATGCCTCTGGCGTCTATGCGTCTAACATCGACTGTTTGGGAATGAAGTATGGTTACGCCTGGCTACCGTCTGGTGCTACTAAGTGTAGGGGGAGTTTCTACACTGCTATCTTAGGCGATACCTGTAAGGAGTGTGGGTTAATGTTTGCCCCTATGGGGGGAGCCAGTGTCTCAGACCTGAACTTCAACGGTTGCTGGGGAAGTTCTTGTGGGACGACTGCATTACATCCTGGAGTACACCTTAATGCTGAGAATGGTGGGCTTGAGAACCTGAACTTTAACGGACTGACCTGTGTTAACAATAAAGGCTCAGGGATACTGCTCACAGGTTATAGTGTAGGAGGCATTAACTTCAGTAACATCAGTTGTAATGCTAACAGTATGGCAACCCGCGGACAGAAGCACGGAATAGAGTTAGGGGCCGGGGTGCAGAATGTGAACTTCACAAACGTTAAGGCTGGTGCAACTCCTGTATTCGAGTTTAATAATCAAGGTTACGGGATCTTTATATCTGACGGTATTGGTAGTGGTGTTAAGTTCGTTAACGTAGATGCCCGAGGTAATGTAAACGGTGCAATAAGTAATGCTAGCGATGCAGCTGTCACCATCGAGAACTGCCCGCAGTATGTTACTTATAATACTGGGGCAGCTAAGATGGCTTCAGGGACCAACTCGGTTACTGTACCTACCGGTATATCGCGCGCCTTACAAGGTCGCTACGTTCAGGTAACTCCTACTACAGATATCAACGCCCCGTTCTGGTTTGAGGTATCTGGTCAGAACATTATTATACGTGTTCGTAATAATGTATCGGGGGACCACTACTTTGGCTGGACGGTATCAGCGCAGCGGTAG

Genome Context

Genome Context

Tertiary structure

PDB ID
a06c3a6ee81ef3992e364ec5aeead331bfa637c0b50eaf7a33ed46ffd564e2a6
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8842
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
A collection of diverse bacteriophages for biocontrol of ESBL- and AmpC-beta-lactamase-producing E. coli Vitt,A.R., Sorensen,A.N., Bojer,M.S., Bortolaia,V., Sorensen,M.C.H. and Brondsted,L. 2023 — GenBank