Protein

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Genbank accession
UYA98661.1 [GenBank]
Protein name
tail tubular protein B
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MAKAGGTYPDIVQGVSGKPPHRRRPGQTTEQINILSDPVEGLVRRRGTRFAARLPLALSEAARVELQDMDVFDFTQEGREYALLYRRKASALGSASFAFLYDKTGEKFIPITYENSAWVNTLVAGGASSLAAIGSYVYIAGNDNRPSATSTNLWQEETNLHRLAAWIRTGKFNTTYTVTLHRADGTTLQVTYKTVTAAYPGTLDTSDIPFYLNDGTTPDPEYQKHVNDRVNEYNSAVNEWIVTSAEQTRPEYIAEKLSDLLVDEGVASTYLKGSILIDDDQFVDITVDDEGDGTTFFAAGQEITDATYATKYHFHGKIIRVRPSGAGADEAYYLRAELESGETSGFGSVDWFETAGVTCTIDNLVAQLYIYNGQACIARNGAGITSIFPASGDHPAYGERKVGDGLTSPIPWFIDKPITMLSVFQDRLIVGSANYVNASMSGDYLDFWRGSVVTIADDDPVEMFAFGSEGDVLRHAVLYNGNLIIFGERQQYGVSGDALLTPKSPLIRAVSANKDSTDAKAQTSGNFIFYSQYGSEGVSLHQMRVGALNGQQTVTDELSEEQDNWLKGEPLQIATVTAPNVVLFRTRNQPSTFYLYRYEDNKNNGQRQLEAWSKFQYATSLGNILGVSVFKKSGIVFTGRASGVVADVLDFKGELDEHGYIDSRIAYANREENGVADGSVVVNATSDYFLLGTPLARIAEFLSQFDDLDPAALEFGVVSPASVTPTNPFPRDQNGQAVLDGRMALNRVTADVQNTAGMVAVVATRNRVQSSIDFEGRILGDSDNLIGQQPVYSGQLSIPVGREVRECSYTISSKDWLPLRVTGLSWVGQTFNNVRRVS
Physico‐chemical
properties
protein length:838 AA
molecular weight: 91710,87830 Da
isoelectric point:4,84509
aromaticity:0,10024
hydropathy:-0,27148

Domains

Domains [InterPro]
IPR058003
TTP
1–657
IPR058003 IPR058003
DC_0058
STR
1–838
DC_0058
UYA98661.1
1 838
Architecture
STR
STR 1-838
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
UYA98661.1
1 838
Domain Start End Length (AA) Confidence
N-terminal 1 192 192 0,9202
Central domain 193 397 206 0,2622
C-terminal 398 838 440 0,1445
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-192
Central
193-397
C-terminal
398-838

Taxonomy

  Name Taxonomy ID Lineage
Phage Xanthomonas phage vB_Xar_IVIA-DoCa4
[NCBI] 		2975531 Uroviricota > Caudoviricetes > Autographivirales > Gujervirinae > Pradovirus
Host Xanthomonas arboricola pv. juglandis
[NCBI] 		195709 Pseudomonadota > Gammaproteobacteria > Lysobacterales > Lysobacteraceae > Xanthomonas > Xanthomonas arboricola

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
UYA98661.1 [NCBI]
Genbank nucleotide accession
ON932078 [NCBI]
CDS location
range 27948 -> 30464
strand +
CDS
ATGGCAAAGGCAGGCGGAACCTACCCGGACATCGTACAAGGCGTGAGCGGCAAGCCGCCGCATCGTCGGCGACCGGGACAGACGACCGAGCAGATCAACATTCTGTCCGATCCCGTCGAAGGGCTGGTGCGTCGTCGCGGTACGCGCTTCGCAGCCCGGCTGCCTCTGGCCCTGAGCGAGGCAGCGCGCGTCGAGCTGCAAGACATGGACGTGTTCGACTTCACGCAGGAGGGCCGCGAGTACGCGCTGCTGTATCGCCGGAAGGCGTCGGCGCTCGGCTCCGCGAGCTTCGCGTTCCTGTACGACAAGACGGGCGAGAAGTTCATCCCGATCACGTACGAGAACAGCGCGTGGGTCAACACACTAGTGGCAGGCGGCGCGTCGTCGCTCGCAGCCATCGGCAGCTACGTCTACATCGCGGGCAACGACAACCGCCCGAGCGCGACCAGTACCAACCTCTGGCAGGAGGAGACCAACCTGCACCGGCTCGCCGCGTGGATTCGCACCGGCAAGTTCAACACAACCTACACCGTGACCCTGCACCGAGCAGACGGCACCACGTTGCAGGTGACGTACAAGACGGTGACGGCCGCCTACCCCGGCACGCTCGACACCAGCGACATCCCGTTCTACTTGAACGACGGCACCACGCCAGACCCGGAATACCAGAAGCACGTCAACGACCGGGTGAACGAGTACAACTCCGCAGTCAACGAGTGGATCGTCACGAGCGCCGAGCAGACTCGGCCCGAGTACATCGCCGAGAAGCTGTCGGACTTGCTCGTTGACGAGGGCGTGGCCTCGACCTACCTGAAGGGTTCCATCCTCATCGACGATGACCAGTTCGTGGACATCACGGTGGACGATGAAGGCGACGGCACCACGTTCTTCGCGGCGGGGCAGGAAATCACCGACGCCACCTACGCGACCAAGTACCACTTCCACGGTAAGATCATTCGTGTGCGCCCGAGCGGCGCAGGCGCGGACGAGGCGTACTACCTGCGCGCTGAGCTGGAGAGCGGCGAGACCTCGGGCTTCGGCTCGGTGGACTGGTTCGAGACTGCGGGCGTGACCTGCACCATCGACAACCTTGTCGCCCAGCTCTACATCTACAACGGGCAGGCGTGCATCGCTCGCAACGGTGCGGGTATCACCAGCATCTTCCCGGCGAGCGGGGACCATCCCGCATACGGTGAGCGCAAGGTCGGCGACGGCCTCACCTCCCCGATCCCGTGGTTCATCGACAAGCCCATCACGATGCTGTCCGTCTTCCAAGACCGGCTGATTGTGGGTAGTGCGAACTACGTCAATGCGAGCATGAGCGGGGACTATCTCGACTTCTGGCGCGGCAGCGTCGTGACCATCGCCGATGACGACCCGGTGGAAATGTTCGCGTTCGGTTCCGAGGGAGACGTTCTGCGGCATGCGGTGCTCTACAACGGCAACCTCATCATCTTCGGTGAGCGGCAGCAGTACGGTGTGAGTGGCGATGCGCTGCTGACTCCGAAGTCTCCGCTGATCCGGGCGGTGAGCGCCAACAAGGACAGCACCGACGCGAAGGCTCAGACCTCCGGCAACTTCATCTTCTACTCGCAGTACGGTAGCGAGGGCGTGAGCCTGCACCAGATGCGCGTGGGTGCCCTCAACGGACAGCAGACCGTGACCGATGAGCTGAGCGAGGAGCAGGACAACTGGCTGAAGGGAGAACCGTTGCAGATCGCCACGGTGACGGCACCGAACGTGGTGCTGTTCCGCACCCGCAATCAGCCCAGCACGTTCTACCTGTACCGCTACGAGGACAACAAGAACAACGGGCAGCGGCAGCTGGAGGCGTGGAGCAAGTTCCAGTACGCGACATCGCTGGGGAACATCCTCGGCGTGAGCGTGTTCAAGAAGTCGGGCATCGTGTTCACCGGCCGCGCAAGCGGTGTGGTGGCCGACGTGCTGGACTTCAAGGGCGAGCTGGACGAACATGGGTACATCGACTCCCGCATCGCGTACGCGAACCGCGAGGAGAACGGCGTGGCCGATGGCTCCGTCGTGGTCAACGCGACGAGCGACTACTTCCTGCTGGGCACGCCACTGGCGCGCATCGCGGAGTTCCTGTCGCAGTTTGATGACCTCGATCCCGCTGCGCTGGAGTTCGGCGTGGTGAGTCCCGCATCGGTGACTCCGACCAACCCGTTCCCGCGAGACCAGAACGGGCAGGCTGTGCTGGACGGCCGCATGGCACTCAACCGCGTCACCGCCGACGTACAGAACACCGCAGGCATGGTGGCCGTGGTCGCCACGCGCAATCGGGTGCAGAGCAGCATCGACTTCGAGGGCCGCATCCTCGGTGACAGCGACAACTTGATCGGGCAGCAGCCGGTGTATTCCGGGCAGCTGTCGATTCCGGTGGGCCGCGAGGTCCGCGAGTGCAGCTACACGATCAGCTCCAAGGACTGGCTCCCGCTCCGAGTGACGGGCCTGTCTTGGGTTGGTCAGACTTTCAACAACGTGCGGAGGGTTAGCTAG

Genome Context

Genome Context

Tertiary structure

PDB ID
e1bcb827789bfb09b99ff08024f671f3d1d5ee90c59e2830895de7f80a36d530
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,3078
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Comparative analysis of new lytic phages for the biological control of phytopathogenic Xanthomonas spp. Domingo-Calap,M.L., Bernabeu-Gimeno,M., Aure,C.M., Marco-Noales,E. and Domingo-Calap,P. 2022-12-21 — GenBank