Protein

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Genbank accession
YP_009196392.1 [GenBank]
Protein name
long tail fiber protein distal subunit
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,88
TF
Evidence RBPdetect2
Probability 0,87
Protein sequence
MALLKSGSTVGGNLIWHQGLLPLSPAGDSIFYKNYKIYTEKDKPTPEELNVFTKNQLNKGLYRITSSPTGDVWIKFGTLKAGQAGVSYKFEVYGGVGYNGNPNQNGHTTIIFRTGNNASSIALNGAGRAGIRSFNYGNFPVKDVGAIETSRDLYDLYMLVPSFILNSVVNVYAASVDELDSSWTKKWEPQATAPTFNIERTNENFYTTVNKPSKADVGLGNVTNDAQVRKTGDVMTGRLDISIPSSPNTNSLLALSSTSATPLILAKPGSRDYNISIQFKNDAVTRFLGLGPNQELRWGTNLDQGSNAKVYTTEFKPTSDEVQAFYQSPGNLDDRNLNDVKTPGVYRQVMTAQAIASRNYPEQLAGTLIVYRNAANNWGIHQEYRPYNVNKIYIRYSMSDTSWSTWSRVYTQADKPSYDELGFVTNAVHNNWNSATNGNLRRVVASAGGPESIEFYGITAPTNDDRWGLQIAGRTNRIFIRCNEGGSYMSWERLYHTGYKPSKADVGLGNVSNDAQIKRNGDSIGAQIVNSAGWVGGITGSDAQFRAVGGNYGFMIRNDGGNTYFLLTKSGDPMGSWDGVHPLVFNNGNREATFGGKVIFNSNTEIKNNGTILFTKSGANPRNIRIFHGGDATRGGRLEIAGESSYLAYFEERPNNGHVISFNGDVSTSGSISSSGTVTGGTVRSTGDVHLSRNARRHIRFDDGDVDCYIYKDPGNTSLNINLGRFGKGWEFRTDGSFYSGGDGNFNNVYIRSDEKLKKNFVIIENSLSKVEQLSGYIYDKKMNENEEKYEVREAGVIAQELQKVLPESVIETDGILNVSSAGINALLINAIKELSFEVKEQRKLIEELRK
Physico‐chemical
properties
protein length:851 AA
molecular weight: 93610,89590 Da
isoelectric point:8,32952
aromaticity:0,10223
hydropathy:-0,49953

Domains

Domains [InterPro]
DC_2005
STR
27–240
DC_2005 cd19958 IPR048390 IPR030392
DC_1202
STR
331–851
DC_1202
IPR030392
CHP
753–846
IPR030392
YP_009196392.1
1 851
Architecture
STR
STR
ATT
STR
STR 27-240 | STR 330-473 | ATT 474-584 | STR 585-851
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009196392.1
1 851
Domain Start End Length (AA) Confidence
N-terminal 1 144 144 0,4575
Central domain 145 343 200 0,4076
C-terminal 344 851 507 0,6906
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-144
Central
145-343
C-terminal
344-851

Taxonomy

  Name Taxonomy ID Lineage
Phage Cronobacter phage S13
[NCBI] 		1327935 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Cronobacter sakazakii
[NCBI] 		28141 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009196392.1 [NCBI]
Genbank nucleotide accession
NC_028773 [NCBI]
CDS location
range 5336 -> 7891
strand -
CDS
ATGGCTTTACTGAAAAGTGGTTCAACAGTAGGCGGCAATCTTATCTGGCATCAAGGGTTGCTTCCTTTGTCACCCGCTGGTGACTCAATCTTTTACAAAAATTATAAAATTTACACAGAGAAAGATAAACCAACTCCTGAGGAGTTGAACGTTTTTACCAAAAATCAACTTAACAAGGGACTTTATCGAATTACAAGCTCCCCTACAGGTGATGTATGGATTAAATTTGGTACACTGAAAGCTGGTCAAGCTGGTGTTTCTTACAAATTTGAAGTCTATGGTGGGGTAGGATATAACGGAAATCCTAATCAGAATGGACACACGACTATTATTTTCAGAACAGGAAATAACGCTTCGAGTATTGCGTTAAACGGAGCAGGACGTGCGGGTATTCGTTCATTCAACTACGGTAACTTTCCTGTTAAAGATGTTGGTGCAATTGAAACATCCCGAGATCTATATGATCTTTATATGCTTGTTCCTTCATTTATTCTGAATAGCGTTGTTAATGTCTATGCGGCGAGTGTCGATGAATTGGATTCATCATGGACTAAAAAATGGGAACCACAAGCAACTGCTCCTACGTTTAATATTGAAAGAACAAACGAAAACTTTTACACAACGGTTAATAAACCTTCTAAAGCAGACGTTGGACTTGGTAACGTAACAAATGATGCGCAAGTGAGAAAAACTGGTGACGTAATGACAGGACGTTTGGATATTAGCATTCCTAGTAGTCCTAACACTAACTCATTACTAGCTTTGTCTTCCACTTCTGCAACTCCGTTGATTCTTGCTAAACCAGGATCGAGAGATTATAATATTAGCATTCAGTTTAAAAATGATGCTGTTACACGTTTTTTAGGTCTGGGACCTAATCAGGAATTGCGTTGGGGAACAAACTTAGATCAGGGAAGTAACGCCAAAGTCTATACCACTGAATTTAAGCCTACGAGTGATGAAGTTCAGGCATTTTATCAGAGTCCCGGAAATTTAGATGACCGAAATCTAAACGACGTCAAAACCCCGGGTGTTTATAGACAGGTCATGACTGCACAGGCAATAGCATCCCGAAACTATCCCGAACAGCTTGCAGGAACTTTAATAGTTTATAGAAACGCTGCAAACAACTGGGGTATTCATCAGGAATATCGTCCTTATAACGTGAATAAGATTTATATTCGTTATTCTATGTCAGACACCTCTTGGTCCACATGGTCGAGAGTTTATACACAGGCTGATAAACCCTCATATGATGAACTGGGTTTTGTTACCAACGCTGTGCATAATAACTGGAATTCTGCTACCAATGGAAATCTTCGTCGTGTCGTTGCGTCTGCTGGAGGTCCTGAATCTATTGAGTTCTACGGAATAACAGCACCTACTAATGATGATAGATGGGGATTACAAATTGCAGGTCGTACCAACCGAATTTTCATTCGCTGTAATGAAGGCGGTTCTTATATGAGTTGGGAGCGTTTATATCACACTGGATATAAACCTTCTAAAGCGGATGTAGGACTTGGTAACGTATCAAACGACGCACAGATTAAAAGAAATGGCGACTCAATTGGTGCACAAATCGTTAACTCTGCTGGTTGGGTAGGAGGAATAACGGGTTCCGATGCACAATTCAGAGCGGTCGGCGGCAACTACGGATTTATGATTAGAAACGACGGTGGAAACACGTATTTTCTTCTCACCAAATCCGGAGACCCTATGGGTTCTTGGGATGGAGTTCATCCGTTAGTTTTCAATAACGGAAATAGAGAAGCGACTTTCGGTGGAAAAGTAATTTTTAATTCCAACACCGAGATTAAAAATAACGGAACTATTTTATTTACCAAATCCGGAGCAAACCCTAGAAATATTAGAATTTTTCATGGAGGTGATGCAACCAGGGGTGGTCGTTTGGAGATTGCAGGTGAATCTTCGTATCTTGCATATTTTGAAGAACGTCCTAATAATGGTCACGTTATATCTTTTAATGGCGATGTTTCAACATCAGGTTCTATTAGCTCATCAGGAACCGTAACAGGCGGTACAGTTCGTTCTACTGGTGATGTCCATTTGAGTAGAAACGCACGACGTCATATAAGATTCGACGACGGTGATGTCGATTGTTATATCTATAAAGATCCTGGAAATACGTCACTTAATATTAACTTAGGACGATTCGGTAAAGGTTGGGAATTCAGAACCGATGGATCATTCTATTCAGGTGGTGACGGAAACTTTAACAACGTTTATATTCGTTCTGACGAAAAGCTTAAAAAGAATTTCGTCATTATTGAAAACTCTTTGAGTAAAGTCGAACAACTATCGGGTTATATTTATGATAAGAAGATGAACGAAAATGAAGAAAAATACGAAGTTAGAGAGGCGGGTGTAATCGCTCAAGAACTTCAAAAAGTTCTTCCTGAATCCGTTATCGAAACTGATGGAATTCTGAATGTTTCAAGTGCTGGAATTAATGCTCTTTTGATTAACGCAATCAAAGAACTAAGTTTCGAAGTGAAAGAACAACGTAAGTTAATTGAAGAATTACGCAAATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
1b27126f8f4b85112aef206ef4f41df4e44cc74cbff8d5b25ed37933d6977215
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6588
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete Genome Sequence of Cronobacter sakazakii Bacteriophage S13 Kim,Y., Shin,H. and Ryu,S. 2012-06 — GenBank