Protein

View in Explore
Genbank accession
NP_700397.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TF
Evidence RBPdetect
Probability 0,90
TF
Evidence RBPdetect2
Probability 0,85
Protein sequence
MHRIDTPTAQKDKFGQGKNGFTNGDPATGRRATDLNSDMWDAVQEEVCTVIEAAGIPLSKGEHTQLHAAIGRLIDEQVKTRLEKNQNGADIPNKPLFLQNVGLGETINLAAGALQKSQNGGDIPDKKQFARTIGAVTSTTITLGESGWFKIATVVMPQATSTAVIKLYGGAGFNAGSPEQAAISELVLRAGNGSPVGITATLWRRSPSAANEVAWVNTSGDTYDIYINIGQYAYWLIAQYDYTGNANVTLHSTPEYSSVQPGNSTSGQTYTLFNSLMKPTAGDVEALSVNGGRLNGPLGIGTDNALGGNSIVFGDNDTGFKWHSDGVLGIYANNALVGYIDNSGLHMSVDVLTNGAVRAGNAKKLSLTSNNNSTMTATFNLWGDANRPTVIELDDDQGWHLYSQRNPDGSIVFTVNGDITANTLRAGGAIYQNNGDIFGSLWGNGWLSTWINNNLVLDVQLGAGTSVTTWNNAGSWPNTPGYVVTSVWKDYQGENIDGINYAPLQKRVGSQWYTVQGGTV
Physico‐chemical
properties
protein length:520 AA
molecular weight: 55363,57810 Da
isoelectric point:5,05170
aromaticity:0,08462
hydropathy:-0,30596

Domains

Domains [InterPro]
DC_2005
STR
105–397
DC_2005 G3DSA:6.20.70.20
IPR051934
Unmapped
293–518
IPR051934
DC_0801
RBD
449–517
DC_0801
NP_700397.1
1 520
Architecture
STR
RBD
STR 105-397 | RBD 424-517 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage ST64B
[NCBI] 		175950 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Salmonella typhimurium
[NCBI] 		90371 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
NP_700397.1 [NCBI]
Genbank nucleotide accession
NC_004313 [NCBI]
CDS location
range 16918 -> 18480
strand +
CDS
ATGCACAGAATTGATACGCCCACCGCGCAAAAAGATAAATTTGGTCAGGGAAAAAACGGATTTACGAATGGTGATCCCGCCACGGGCCGCCGCGCAACGGATCTCAACAGTGATATGTGGGATGCAGTCCAGGAAGAGGTCTGTACTGTTATTGAAGCCGCCGGCATACCACTCAGTAAAGGCGAACATACGCAGCTTCACGCCGCCATTGGCAGGCTGATCGATGAACAGGTTAAAACCCGTCTTGAAAAAAATCAGAATGGCGCGGACATCCCGAATAAGCCGCTGTTTCTCCAGAACGTCGGTTTAGGAGAAACGATAAATCTCGCTGCAGGGGCCCTGCAAAAATCGCAGAACGGCGGCGATATTCCTGACAAAAAACAATTTGCGAGAACCATCGGTGCGGTAACGTCAACCACCATTACACTTGGCGAATCAGGCTGGTTCAAAATCGCCACGGTTGTAATGCCGCAGGCTACATCAACTGCGGTGATTAAACTGTACGGTGGGGCGGGGTTTAACGCTGGTTCACCTGAACAGGCGGCAATCAGCGAACTGGTATTGCGTGCCGGTAATGGTTCACCTGTTGGAATAACCGCCACATTATGGAGGCGTTCACCTTCTGCTGCTAACGAGGTCGCATGGGTTAATACATCAGGCGACACCTACGATATTTATATTAATATCGGCCAGTATGCGTACTGGTTAATTGCGCAATATGATTACACCGGTAATGCAAATGTCACGCTGCACAGTACGCCTGAATATTCATCAGTTCAGCCGGGAAACTCAACCAGCGGTCAGACATATACACTGTTTAATAGTCTGATGAAACCCACAGCCGGTGACGTTGAGGCACTGTCAGTTAATGGAGGGAGGCTAAACGGTCCGTTAGGCATTGGTACTGATAATGCGCTGGGTGGTAATTCGATTGTATTCGGAGATAACGATACAGGGTTTAAGTGGCACAGTGACGGCGTTCTGGGGATTTATGCCAATAATGCTCTGGTTGGTTATATCGACAATTCCGGGCTGCACATGTCAGTAGATGTTCTCACTAATGGTGCCGTACGCGCAGGCAACGCAAAAAAACTGTCACTGACGAGCAATAATAATTCGACAATGACAGCCACGTTTAATTTATGGGGCGACGCAAACAGGCCAACAGTTATTGAACTGGACGACGATCAGGGATGGCATCTGTACAGCCAGCGAAATCCTGACGGTTCGATTGTCTTTACGGTCAATGGAGATATCACCGCTAACACGCTTCGTGCAGGCGGGGCTATCTATCAGAATAACGGCGACATCTTTGGTTCGCTATGGGGAAATGGCTGGTTAAGTACCTGGATTAATAATAATCTCGTCTTAGATGTTCAGTTAGGGGCTGGCACATCAGTGACTACCTGGAACAATGCAGGTTCCTGGCCTAACACTCCCGGATATGTAGTTACCTCCGTCTGGAAAGATTATCAGGGCGAAAATATTGATGGTATTAATTATGCGCCTTTGCAAAAACGAGTCGGGAGTCAGTGGTATACCGTACAAGGGGGAACGGTATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
889fd83d703fec1185c261baa3c8b87f1b7c58e67463116fa9c973bada634d6f
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7562
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genetic characterization of Salmonella enterica serovar Typhimurium bacteriophage ST64B Mmolawa,P.T., Thomas,C.J. and Heuzenroeder,M.W. 2003-11 — GenBank