Protein

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Genbank accession
ATS93699.1 [GenBank]
Protein name
tail tubular protein B
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,56
Protein sequence
MALVSQSIKNLKGGISQQPDILRYPEQGAVQINGWSSETQGLQKRPPLLFTKALGVAGYLGEKPYVHLINRDEFEQYFAVFTGSDVKVFDMTGHEYTVRGDRSYITVANPREDLRMVTVADYTFVVNRTKVIKVSPVKSNGGTFRDDGDALINIRGGQYGRTLRVIINGTEAAKYQIPNGSAPEHVKNTDAQFLATTLQAQMVTNLGSAGWTFTVGQGYIHIQAPAGTAINTLTTEDGYADQLINPVTHYTQTFTKLPLNAPDGYLVKIVGDTSKTADQYYVVYDAKQKVWKETVGWNQLTSWDDQTMPWTLIRAADGNFDLKPQDWVDRKAGDDDTNPFPSLEDSQINDVFFFRNRLGFLSGENIVMSRTAKYFDFFPPSVANLSDDDPIDVAVSHNRVSILKYAVPFTEELLLWSDEAQFVLGAAGVLSSRSVELNLTTQFDVQNLARPYGIGRNIYFSSPRASYSSIERYYAVQDVTRVKSAEDVSAHVPSYIPNGVFSIHGSSTENFASVLTEGAKGKIFIYKFLYVDEVVRQQSWSHWDFGDNVTVYSAATIGSRMYTLMGNGVSCWLGEVNFTKDSVDIESEPYRLYIDNKTEYVIPAGSYNLDTNETTFSLTNVYGMASAKGAVSIVEPDGRTSYIPEPDGGWAVHPNISLPNDMSGIGVFVGFNIQFHYEFSKFLIKKSADDGSVATEDIGRLQLRRAWVNYEDSGAFTIQVENQSRMFQYEMAGGRLGSSNLRVGRLNVGTGQYKFPVVGNATYNVVRILSEATTPLNVIGCGWEGNYIRRSSGI
Physico‐chemical
properties
protein length:794 AA
molecular weight: 88143,58280 Da
isoelectric point:5,26149
aromaticity:0,11587
hydropathy:-0,27935

Domains

Domains [InterPro]
IPR058003
TTP
1–794
IPR058003
ATS93699.1
1 794
Architecture
TTP
TTP 1-794
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
ATS93699.1
1 794
Domain Start End Length (AA) Confidence
N-terminal 1 141 141 0,9927
Central domain 142 348 208 0,1294
C-terminal 349 794 445 0,1638
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-141
Central
142-348
C-terminal
349-794

Taxonomy

  Name Taxonomy ID Lineage
Phage Pectobacterium phage DU_PP_II
[NCBI] 		2041489 Uroviricota > Caudoviricetes > Autographivirales > Studiervirinae > Unyawovirus
Host Pectobacterium sp.
[NCBI] 		1913084 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
ATS93699.1 [NCBI]
Genbank nucleotide accession
MF979561 [NCBI]
CDS location
range 24500 -> 26884
strand +
CDS
ATGGCATTAGTAAGCCAGAGCATTAAGAACCTTAAAGGTGGTATCTCACAGCAGCCAGACATCCTAAGGTATCCCGAACAGGGAGCCGTACAGATTAACGGCTGGTCGTCTGAGACCCAAGGCCTCCAAAAGAGACCCCCATTGCTATTCACGAAGGCCTTAGGGGTCGCTGGGTATCTAGGCGAGAAACCTTATGTCCACCTGATTAACCGTGATGAATTCGAGCAATACTTTGCGGTCTTCACAGGGTCAGACGTTAAGGTTTTCGACATGACAGGCCATGAGTACACTGTTCGTGGTGACCGTTCGTATATCACGGTGGCTAACCCAAGGGAAGACCTAAGGATGGTCACAGTGGCTGACTATACGTTCGTAGTGAATCGAACGAAGGTCATCAAGGTCTCTCCAGTTAAATCCAATGGTGGGACTTTTAGGGATGATGGGGACGCCCTAATTAATATCAGGGGTGGGCAATATGGTAGAACCTTGAGGGTTATTATTAATGGGACTGAAGCAGCCAAGTATCAAATACCGAACGGTAGCGCTCCAGAGCACGTAAAGAACACTGATGCGCAGTTCTTAGCGACTACCCTTCAGGCTCAAATGGTTACTAACTTAGGGTCTGCCGGATGGACATTCACGGTAGGTCAAGGATACATTCACATTCAGGCACCAGCAGGTACAGCCATTAATACCCTCACCACAGAGGATGGCTATGCTGACCAATTGATTAACCCTGTGACCCACTACACTCAGACGTTCACTAAGCTCCCCCTTAACGCGCCTGATGGCTACCTTGTGAAAATCGTAGGGGACACCTCAAAGACTGCCGACCAGTATTATGTAGTTTATGACGCTAAGCAGAAGGTCTGGAAGGAGACCGTAGGTTGGAACCAATTGACCTCATGGGATGACCAGACGATGCCTTGGACTCTCATTAGGGCAGCAGATGGTAACTTCGACCTTAAGCCACAGGATTGGGTAGACCGTAAGGCTGGTGATGATGACACTAACCCGTTCCCCTCACTGGAGGATTCACAGATAAACGATGTGTTCTTCTTCAGGAATCGCTTAGGGTTCCTTTCAGGTGAGAACATTGTGATGAGTCGAACAGCTAAATACTTTGACTTCTTCCCACCGTCCGTAGCCAACTTAAGTGACGATGACCCGATAGATGTGGCGGTAAGTCATAACCGTGTGTCAATCCTGAAGTATGCCGTTCCGTTCACTGAAGAGTTGCTCCTGTGGTCTGATGAGGCTCAGTTCGTTCTGGGAGCAGCGGGAGTCCTATCAAGCCGAAGCGTAGAGTTGAACCTTACGACACAGTTCGATGTGCAGAACCTAGCGAGACCTTACGGTATTGGGCGTAACATCTACTTCTCGTCACCTAGAGCCTCTTATAGCTCCATTGAGCGCTACTATGCAGTACAGGACGTTACTCGCGTTAAGTCTGCCGAAGATGTCTCAGCGCACGTTCCAAGCTACATCCCTAACGGTGTCTTCAGTATCCACGGGTCATCCACGGAGAACTTTGCGTCTGTCTTAACGGAAGGAGCTAAGGGCAAAATCTTCATCTATAAGTTCCTTTATGTAGACGAAGTGGTACGCCAACAGTCATGGTCTCATTGGGACTTTGGGGATAACGTCACGGTCTACTCAGCGGCTACCATAGGTTCCCGTATGTACACCTTGATGGGTAATGGTGTTAGTTGCTGGTTAGGTGAAGTGAACTTTACGAAGGATAGTGTTGACATTGAGTCTGAACCTTATCGACTCTACATAGATAACAAGACCGAGTATGTTATTCCAGCTGGTAGCTACAATCTGGACACCAATGAGACCACTTTCAGTCTAACCAATGTGTATGGCATGGCGAGTGCTAAAGGGGCTGTCTCTATTGTGGAACCTGACGGTAGGACTAGTTACATACCTGAGCCTGATGGGGGCTGGGCAGTTCACCCAAACATCTCACTTCCTAACGATATGTCTGGCATTGGGGTGTTCGTAGGGTTCAACATTCAGTTCCATTATGAATTCTCTAAGTTCCTCATTAAGAAGTCAGCTGATGATGGCTCTGTAGCAACGGAGGATATCGGTCGGTTACAGCTTCGGAGAGCTTGGGTCAACTATGAGGACTCTGGGGCGTTTACGATTCAGGTAGAGAACCAATCACGGATGTTCCAATATGAGATGGCTGGAGGTCGCCTAGGGTCTAGTAACCTAAGGGTGGGACGATTGAATGTAGGTACTGGACAATACAAGTTCCCTGTGGTTGGTAATGCTACTTATAACGTTGTGAGAATCCTTAGTGAAGCCACAACGCCACTTAACGTAATTGGCTGTGGATGGGAAGGTAACTACATTCGGAGGTCAAGCGGTATTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
ff01a7e43607b3c585e0cb7efc525c0eeba40481a4b6bbb70bcfff79dc73d68e
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8911
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequence of bacteriophage (DU_PP_II) infecting Pectobacterium spp. Park,T.-H. 2017-11-22 — GenBank