Protein

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Genbank accession
BDR25909.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence RBPdetect2
Probability 0,50
Protein sequence
MSTYSRTVGVNPSASKTPTGRAQKYYGMYIGFVKDNVDSNRMGRLRVWVPEFGTDPSDESGWLLVGYCSPFAGATNPMTIGGSQDVSAFHETQTSYGMWAVPPDLENQVAVMFANGDPAKGFWFGCIWQQQMNHMIPAVAGSVNNYETAGKSLPVGEYNKNTLEKVNAQTINKPVASLAQGLKTQGLINDNIRGVSSSSARREAPSQVFGILTPGPVIDGANARRHGGHQFVMDDAPTSEHITLRTRSGAQIRLDETNGIIYIINKLGTAWIELDNSGNVDVFGAKSGSLRFMEDFNIRADRDINIEAGRNINIKASKDYTTVSTGGIAPELTGQGGDIFIQANNNLNIQSQKDTLLNQLGGSLHNTAGVDISLKAGSNYNLQAAGQIATATNGTYGLSAGGDIIELGANIHMNGPQPPAPDSPTEASTPTTNGKTNILPEFSDANRYNRMSQPGVTTIVSRFNTFEPCPEHKNKGA
Physico‐chemical
properties
protein length:477 AA
molecular weight: 51082,29420 Da
isoelectric point:5,94049
aromaticity:0,07338
hydropathy:-0,41509

Domains

Domains [InterPro]
SSF69255
ATT
25–126
SSF69255 DC_1827 SSF69349 DC_1558
SSF69255
ATT
25–130
SSF69255 SSF69349
BDR25909.1
1 477
Architecture
ATT
STR
RBD
ATT 25-130 | STR 131-415 | RBD 416-477
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
BDR25909.1
1 477
Domain Start End Length (AA) Confidence
N-terminal 1 256 256 0,1455
Central domain 257 455 200 0,3719
C-terminal 456 477 21 0,9971
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-256
Central
257-455
C-terminal
456-477

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage sp. 30-2
[NCBI] 		2972142 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Pseudomonas aeruginosa
[NCBI] 		287 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Pseudomonadales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
BDR25909.1 [NCBI]
Genbank nucleotide accession
LC727697 [NCBI]
CDS location
range 247903 -> 249336
strand +
CDS
ATGAGTACATATTCTAGAACAGTAGGTGTAAATCCGTCTGCTAGCAAAACACCGACAGGCAGAGCACAAAAATATTACGGAATGTATATTGGGTTTGTCAAAGATAATGTCGATAGCAACAGAATGGGAAGACTTAGGGTTTGGGTACCGGAATTCGGTACTGATCCGAGCGATGAATCTGGTTGGTTGTTAGTTGGATACTGTTCGCCATTTGCTGGCGCAACTAATCCTATGACAATCGGCGGCTCACAAGATGTATCTGCATTCCACGAAACACAAACATCTTACGGTATGTGGGCAGTTCCGCCAGATCTTGAAAATCAGGTAGCTGTAATGTTTGCTAACGGCGACCCTGCAAAGGGATTTTGGTTTGGATGCATATGGCAACAACAGATGAATCATATGATTCCTGCAGTTGCTGGCAGTGTTAATAATTATGAGACAGCAGGCAAATCTCTACCTGTAGGCGAATATAATAAAAACACACTAGAAAAAGTAAATGCACAAACTATTAATAAACCTGTTGCTAGTCTTGCCCAAGGATTAAAAACGCAAGGGCTTATTAACGATAATATACGGGGTGTATCTTCATCATCTGCACGCAGGGAAGCACCTAGTCAGGTATTCGGTATTCTTACCCCAGGTCCAGTAATAGACGGTGCAAATGCAAGAAGGCATGGCGGTCATCAGTTCGTTATGGATGATGCACCCACATCCGAACATATCACATTAAGAACTAGATCTGGTGCTCAAATAAGATTAGATGAAACTAATGGAATAATTTATATAATTAATAAATTGGGCACTGCTTGGATAGAATTAGATAACTCGGGCAACGTAGATGTATTTGGTGCAAAATCCGGATCTTTACGTTTTATGGAAGATTTTAATATACGAGCAGATAGAGATATTAATATAGAGGCAGGAAGAAATATAAACATTAAAGCATCTAAAGACTATACTACTGTTTCTACCGGAGGCATAGCACCGGAACTAACAGGTCAAGGCGGAGATATATTTATACAAGCTAATAATAATTTAAATATTCAATCACAAAAAGATACATTACTAAATCAATTAGGAGGCAGTTTGCATAACACTGCCGGAGTTGATATATCTTTAAAAGCAGGTTCTAATTATAATTTACAAGCTGCAGGACAGATAGCAACTGCTACTAACGGAACATATGGGTTAAGTGCAGGCGGGGATATTATCGAGTTAGGTGCTAATATACATATGAACGGTCCGCAGCCGCCTGCGCCTGATTCTCCTACTGAAGCAAGTACACCTACTACTAATGGCAAAACTAATATATTGCCTGAGTTTAGTGATGCAAATAGATATAATAGAATGTCTCAGCCAGGAGTAACTACTATAGTATCTAGATTTAATACATTCGAACCGTGCCCTGAGCACAAAAATAAAGGAGCATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
f31f6334a94fa7c16e6daaaf4296436dfe5106ac381e5069e0485fff9259bf35
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5904
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Whole-Genome Sequence of Pseudomonas phage 30-2 Fujiki,J., Nakamura,T., Nakamura,K., Tamamura,K., Ichikawa,N., Ishiguro,Y. and Iwano,H. 2021-07 — GenBank