Protein

View in Explore
Genbank accession
YP_009811214.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,90
Protein sequence
MASQAIYVDALRLTSVGEQAVSTANAGGIVVKPVAFKVGDFTGSQPSAVPSQLLGNELASGQLSFVQIVSENSARFVFDVSIEYKNNEEIKSVGEILIMLEDNRAFGHVVLSNPIMVVPNSAARISLLVHLKQDIQRILDVTMYDYATIPSVATLENLPASDNNQFNAVSVLDLHVNSDGSKSPGTAFRYGPGGYNWGFGEHDRVLSKTIGADFINANTFNTSLKLAQDEIVIVQTISGPGAGACRHFKYRNGQLINQDKAIPFISSATTIAVWKRIVNPIVPTSGIPWPEDNDVPAAWALFRGEGNKLYWGPVAGGNRQTTATLFTPPGKLLFSSLVTTGSTDAITYALSEELDSATDLLLGTSGVLQPRTAYEVRKKEMALSENLPNAMTLDLRQFRLEPSQGHVVLFEAYDFTGDGQTSEFKLGNAPVDDADHVFAVVGNTWQPTTVYKLNNGNRLKFVDSIPSGHKVSLYAARYEERAGWSTRIRVATFKLPYATDTFELPVTPLNKAHVIANMGGLPAHTADFTLVGSTIRFSTQVKANTTVEFTIFENVKSVGSKDTNIEGVIVDVIATPTGYMFKRQGMTPLSVPLFTPDIVAGKGIKIEGVWPFVKIHSIAAMAEAEDPKAIFNIQNRVEDSEEIIIRQRIEFNKGIVITATADFQAQLGPGFAVAIGNEHLEFVLASATPGSDAPEYGRGVKGTGAAGLAVVNPNSTESIAYGNASITQMYDLIRDNHPAGYVEIVAKMRISNAMIGNYGSKLIANLCIKVEPR
Physico‐chemical
properties
protein length:773 AA
molecular weight: 83456,67660 Da
isoelectric point:5,58616
aromaticity:0,08409
hydropathy:-0,02820

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009811214.1
1 773
Domain Start End Length (AA) Confidence
N-terminal 1 292 292 0,9848
Central domain 293 598 307 0,0712
C-terminal 599 773 174 0,9408
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-292
Central
293-598
C-terminal
599-773

Taxonomy

  Name Taxonomy ID Lineage
Phage Dickeya phage vB_DsoM_JA29
[NCBI] 		2283031 Uroviricota > Caudoviricetes > Salmondvirus >
Host Dickeya solani MK10
[NCBI] 		1224151 Pseudomonadota > Gammaproteobacteria > Enterobacterales > Pectobacteriaceae > Dickeya > Dickeya solani

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009811214.1 [NCBI]
Genbank nucleotide accession
NC_048053.1 [NCBI]
CDS location
range 66196 -> 68517
strand -
CDS
ATGGCATCACAAGCAATTTATGTTGATGCGCTTCGGCTAACGTCTGTCGGGGAACAAGCAGTTTCTACCGCCAACGCAGGTGGAATCGTAGTAAAGCCTGTCGCTTTCAAAGTCGGCGATTTTACTGGTTCTCAGCCTAGCGCAGTACCTTCGCAGCTATTAGGAAACGAGCTTGCTTCCGGACAACTTTCTTTTGTTCAGATTGTGAGTGAAAACTCTGCGCGTTTTGTTTTTGATGTTTCTATCGAATATAAAAACAACGAAGAAATCAAATCGGTCGGTGAAATTCTCATCATGCTCGAAGACAATCGTGCCTTCGGGCATGTTGTGCTTTCTAATCCGATCATGGTGGTTCCAAACAGCGCGGCTCGTATTAGTTTGCTCGTACATTTAAAACAAGACATTCAAAGAATTCTTGATGTGACGATGTATGACTATGCAACTATTCCTTCCGTTGCTACACTTGAGAATCTTCCTGCCTCTGATAATAACCAATTCAATGCAGTTTCTGTTCTCGATCTTCATGTGAATAGTGACGGTTCGAAATCTCCCGGCACCGCTTTTCGTTATGGCCCCGGGGGATATAATTGGGGATTCGGCGAACATGATCGTGTGCTTTCAAAAACAATCGGCGCTGATTTTATTAACGCAAACACCTTCAACACAAGTTTGAAACTTGCGCAAGATGAAATCGTTATTGTTCAGACTATCAGTGGCCCCGGTGCTGGCGCGTGTCGTCATTTTAAATATCGCAACGGACAACTGATTAATCAGGATAAAGCAATTCCGTTTATCAGTAGCGCAACAACAATCGCAGTGTGGAAACGCATTGTGAATCCGATTGTTCCGACTTCTGGTATTCCGTGGCCGGAAGACAATGATGTTCCTGCTGCGTGGGCTTTATTTCGCGGCGAAGGAAATAAACTCTATTGGGGGCCAGTCGCAGGAGGTAACAGACAAACTACTGCAACTCTGTTTACGCCTCCGGGAAAACTTTTATTTAGTTCTCTCGTTACAACTGGCTCAACCGATGCGATTACTTATGCTCTTTCCGAAGAACTGGATAGCGCAACGGATCTATTGCTTGGCACCAGTGGAGTTTTGCAGCCTCGCACCGCGTATGAAGTTCGTAAAAAAGAAATGGCTCTTTCAGAAAACTTGCCTAACGCGATGACTCTGGATCTGCGTCAATTCCGTTTGGAACCGTCGCAAGGCCATGTTGTTCTTTTTGAAGCGTATGACTTTACAGGTGACGGACAAACGAGTGAATTCAAACTCGGTAACGCTCCGGTAGATGATGCGGATCATGTGTTCGCTGTTGTTGGAAATACTTGGCAACCAACTACTGTCTATAAACTGAATAACGGAAACCGTTTGAAATTTGTAGATAGCATTCCTAGCGGTCATAAAGTTTCGCTGTATGCTGCGCGGTACGAAGAACGTGCTGGATGGTCAACGCGAATTCGTGTCGCGACTTTCAAACTTCCTTATGCTACAGATACGTTTGAACTTCCAGTTACTCCGCTGAATAAAGCGCACGTAATTGCTAACATGGGCGGTCTGCCTGCGCACACTGCGGATTTCACTCTTGTTGGAAGTACAATTCGTTTTTCAACTCAGGTGAAAGCAAACACAACTGTTGAATTCACAATTTTCGAAAACGTTAAAAGTGTTGGTAGCAAAGACACAAACATCGAAGGCGTGATTGTTGATGTGATTGCAACTCCTACTGGATACATGTTCAAACGTCAGGGCATGACTCCGTTAAGTGTTCCGCTGTTTACGCCTGATATCGTTGCAGGAAAAGGAATTAAAATTGAAGGCGTCTGGCCTTTCGTTAAAATTCATTCCATTGCAGCAATGGCAGAGGCAGAAGATCCCAAAGCAATTTTTAACATTCAAAACCGCGTCGAAGACAGCGAAGAGATTATTATTCGCCAGCGCATTGAATTCAACAAAGGTATTGTGATTACTGCCACTGCTGATTTTCAAGCGCAACTTGGGCCAGGTTTTGCAGTTGCTATCGGCAACGAACATTTAGAATTTGTTCTTGCTTCTGCGACTCCGGGATCTGATGCTCCTGAATACGGGCGCGGCGTTAAAGGTACTGGTGCTGCTGGTCTTGCTGTTGTGAATCCAAACAGCACTGAATCTATTGCTTACGGCAACGCAAGCATAACGCAGATGTACGATCTTATTCGTGATAATCATCCTGCTGGTTACGTGGAGATTGTTGCGAAGATGCGTATCAGCAATGCGATGATCGGTAACTACGGATCAAAACTTATTGCTAATCTCTGTATTAAGGTGGAACCGCGATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
bd246b7480ef41cc7bd29e5f459efa73ed4b7f09790b658b1db28af467bac2a7
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5791
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Jumbo Bacteriophages Are Represented Within an Increasing Diversity of Environmental Viruses Infecting the Emerging Phytopathogen, Dickeya solani Day,A.W., Ahn,J. and Salmond,G.P.C. 2018 — GenBank