Protein

View in Explore
Genbank accession
AIZ01462.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MADFSQTSFKGGVIAPRLQFNEYESAYHHSIEDAVNFVVTEQGSLITRCGSEEVGLCQDGEVRLFRLPAVDAPSNDVIVEVGNTNIAVWVNDVRQVVANTPSEWRNTIDRIQTAYDTIGDDAGAANTGRLIMVHPALQPKRLYRDNNNAWQFVNMHTGAVPAEWSPSNYPQTVGIFQNRVWYVGSPVHRTYFWATRAGKLEDIAPSTANNPNDPISFVGIMEGTPCWIIASSDVLTIGTTINDYQLAASTGVSVTAATAILRRSSVQGTAAVQGIPAEEQVIFCSRNKSKVYAMNYVREQDNWIPDEMSSQAQHLFTPISSAKGASVRRVAYISDAAKSLWVVLENGQINYCCFDRTTDTKAWTQLELSGGKVIDIAAAFNPDSDYAYVAVVRSKAINGVQKNYTVLEKIPSPRTDWKRADGWVVAQVNQNGDVLNLDRYIGRTAVIFSKYGLEAEVEVNNIGLTHRINGYDPNTVYYVGYKMDSYFRTLTPSNGDMKKSMFGSKMRISKVQLALFDSIEPTVNGEPADDRSTDDIMDARLLDFSSNSGSSNGTRLVDYNPLGWENDGKMVIAVEQPFLCEVVGVFSVVQSNKV
Physico‐chemical
properties
protein length:594 AA
molecular weight: 65561,71930 Da
isoelectric point:5,11872
aromaticity:0,09428
hydropathy:-0,24949

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AIZ01462.1
1 594
Domain Start End Length (AA) Confidence
N-terminal 1 584 584 0,8842
Central domain 585 584 1 0,0022
C-terminal 585 594 9 0,8484
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-584
Central
585-584
C-terminal
585-594

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage H1
[NCBI] 		1558464 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Vibrio cholerae
[NCBI] 		666 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AIZ01462.1 [NCBI]
Genbank nucleotide accession
KM612261 [NCBI]
CDS location
range 11566 -> 13350
strand +
CDS
ATGGCAGACTTCAGTCAGACCAGCTTCAAGGGGGGCGTAATTGCTCCCCGACTTCAATTCAACGAATACGAGTCGGCGTACCATCACTCTATTGAGGATGCTGTCAACTTTGTCGTTACTGAACAAGGAAGCTTAATAACACGGTGCGGCTCGGAGGAAGTTGGATTGTGCCAAGATGGCGAAGTCCGCCTTTTCCGATTGCCAGCCGTTGACGCACCCTCTAATGACGTTATTGTAGAGGTGGGTAATACTAACATAGCTGTTTGGGTTAATGACGTACGTCAGGTGGTGGCCAATACTCCCAGCGAATGGCGCAACACGATTGACCGAATCCAAACAGCATACGACACCATAGGGGACGATGCAGGTGCAGCCAACACAGGACGCCTGATTATGGTTCATCCTGCATTGCAGCCCAAACGACTGTACCGCGACAACAACAATGCATGGCAATTCGTGAACATGCACACAGGCGCGGTTCCTGCTGAGTGGTCTCCTAGTAATTATCCTCAGACAGTGGGCATTTTCCAAAACAGAGTTTGGTATGTGGGTTCTCCCGTTCACCGGACTTATTTTTGGGCTACGCGAGCAGGTAAGTTGGAAGATATCGCGCCTAGCACGGCCAACAATCCTAATGACCCTATTAGTTTCGTGGGTATTATGGAGGGGACGCCTTGCTGGATTATCGCATCTTCTGACGTGTTGACCATCGGAACAACAATAAACGACTACCAGTTAGCTGCCTCTACTGGTGTGTCGGTCACAGCGGCGACGGCCATATTGCGTCGTTCGTCTGTTCAGGGGACGGCGGCAGTCCAAGGGATTCCTGCGGAGGAGCAAGTTATTTTCTGCTCCCGCAACAAGTCCAAAGTATATGCCATGAACTATGTCAGGGAGCAGGATAACTGGATTCCTGACGAAATGTCGAGCCAAGCACAGCACTTATTTACGCCGATTTCGTCTGCGAAGGGTGCTAGCGTCCGTAGGGTCGCCTATATCTCAGATGCGGCGAAGTCTCTTTGGGTTGTGTTAGAGAATGGTCAAATCAATTATTGCTGTTTTGACCGCACGACGGACACCAAAGCATGGACTCAATTGGAGCTTTCAGGCGGAAAGGTGATTGACATCGCCGCCGCATTCAACCCAGACTCCGATTACGCTTACGTTGCCGTGGTCAGAAGCAAGGCGATAAACGGAGTTCAAAAGAACTACACCGTGTTGGAGAAAATCCCATCGCCTCGCACTGATTGGAAGAGAGCAGACGGATGGGTAGTGGCACAAGTCAACCAAAACGGCGACGTGCTGAACTTAGACAGATACATCGGCAGAACGGCAGTAATCTTCAGCAAATACGGGCTAGAAGCCGAGGTTGAAGTAAACAATATCGGTTTGACGCACAGAATCAACGGCTATGACCCGAACACCGTGTACTATGTAGGGTACAAGATGGATAGCTACTTCCGCACATTAACCCCATCAAACGGAGACATGAAAAAGTCGATGTTTGGGAGCAAAATGCGGATTAGCAAGGTGCAGTTAGCCCTTTTTGATAGTATAGAGCCAACTGTAAATGGCGAACCTGCCGACGACCGCAGCACGGACGATATTATGGATGCGAGATTATTAGACTTTTCTTCTAATTCAGGCAGTAGCAACGGCACAAGACTAGTCGACTACAATCCTTTGGGTTGGGAAAATGACGGCAAAATGGTGATAGCCGTTGAGCAACCTTTCTTATGCGAGGTGGTCGGTGTCTTCTCAGTAGTTCAATCCAACAAGGTATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
4a72afda9001d199430b6c2f167bbbc636a9009fa9616a27e1dc57a4dee17672
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8696
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequences of seven Vibrio cholerae phages isolated in China Bhandare,S.G., Warry,A., Emes,R.D., Su,J., Barrow,P.A. and Atterbury,R.J. — — GenBank