Protein

View in Explore
Genbank accession
UJD21340.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,88
TF
Evidence RBPdetect2
Probability 0,83
Protein sequence
MQLLRQTVLAEADRATQVVDGKLDKVDISGFIKVYKTKAEADADVANRVLDEKVLVWNQTDSKYGWYKVAGTAEAPVLELVEVEQKLVSINNVHADDAGNVQITLPGGNPSLWLGEVTWFPYDKDSGVGYPGVLPADGREVFRVDYPDTWEAIEAGLIPSVTEEQWQAGATLYFSTGNGTTTFRLPDMMQGQAFRAAAKGEENAGNIKEQIPYITMINGKAPADDGTITLGNAADKNVWNGIDGEVLLRGAFGLGGAGLVLNEPDAVSFFKAMRAFGSGYYRNDHESNLVIPKYSAGFYSKTADTHTFICSAYGSGATFVGTVNDAQLDGESPVINTNILYGTANKPDLTNDTTGILPVARGGTGADTPEQARENLGVGAITKFGGYTAVQSPNKTHRLALGDDGVFVWQTAEGATVPFPVNVGGTGAITVEGARDNLGLGKLQTPRFAHLDLVVGIEGDGNGGILNLNKVNGSEVTTSQSRIYHEVQGGKAKTTIHTRKIEGGEKNHYLQIDEDGNLTNVNALRSEHVYTGGVSSTGWISANQNNRIGCITQAGGNKDIYLSNVPDDGAGGGWVNLIQGNFYNGWWQMGGRRTGSDSLQNAEIRVNSGKGQEGWFVFNPNGRLVVSQGFNAYAPANTPMLRMEGTATGETGCFASGLVASGGWVDWRTRPCGMLVESPATDSAVNVFKVVKWGTDWVTSMDCIAWSAGGATTRINVSGASYEFNHGGTATAAAWVSSSDIRLKANLNKIETAREKVKSLVGYTYYKRNNTQAEDEHSIYSIEAGLIAQDVQLVLPEAVEKIGDSDLLGVNYAGVTALLANAVNEMSELVESQQEELKSIKAELAELKALVATLVNK
Physico‐chemical
properties
protein length:857 AA
molecular weight: 91505,86730 Da
isoelectric point:4,91341
aromaticity:0,08168
hydropathy:-0,25904

Domains

Domains [InterPro]
DC_0608
ATT
6–355
DC_0608 DC_0613
DC_1942
ATT
331–416
DC_1942 IPR030392
IPR030392
CHP
739–799
IPR030392 Coil
UJD21340.1
1 857
Architecture
ATT
RBD
ATT 6-416 | RBD 474-857
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
UJD21340.1
1 857
Domain Start End Length (AA) Confidence
N-terminal 1 115 115 0,9923
Central domain 116 386 272 0,1862
C-terminal 387 857 470 0,7985
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-115
Central
116-386
C-terminal
387-857

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage vB_STy-RN29
[NCBI] 		2910950 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Salmonella typhimurium
[NCBI] 		90371 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
UJD21340.1 [NCBI]
Genbank nucleotide accession
OL800604.1 [NCBI]
CDS location
range 21520 -> 24093
strand +
CDS
ATGCAACTGCTGAGGCAGACCGTGCTTGCTGAGGCAGACCGTGCGACTCAGGTTGTTGATGGTAAACTTGATAAAGTAGATATTTCTGGTTTTATCAAAGTTTATAAGACAAAAGCGGAAGCTGATGCTGATGTTGCAAACCGCGTCTTAGATGAGAAAGTTCTAGTCTGGAACCAAACTGATTCAAAATATGGTTGGTACAAAGTTGCTGGTACTGCTGAGGCTCCTGTCCTAGAACTAGTAGAAGTTGAACAGAAACTTGTATCAATCAACAATGTTCATGCGGATGATGCAGGTAACGTACAGATTACCCTTCCAGGCGGTAACCCTTCTCTGTGGTTAGGTGAGGTTACTTGGTTCCCTTATGATAAAGATTCAGGTGTTGGTTATCCGGGTGTTCTTCCAGCAGATGGTCGTGAAGTTTTTCGTGTAGACTATCCAGATACTTGGGAAGCTATTGAAGCTGGTTTGATTCCTTCTGTAACAGAAGAACAATGGCAAGCTGGTGCAACTCTCTACTTTTCCACTGGTAATGGTACTACTACTTTCCGTCTACCTGATATGATGCAGGGACAAGCATTCCGTGCCGCTGCAAAAGGCGAGGAAAATGCTGGTAATATTAAAGAGCAAATTCCTTATATTACTATGATCAATGGTAAAGCTCCTGCCGATGATGGTACTATTACTCTAGGTAATGCTGCGGATAAAAACGTATGGAATGGTATTGATGGCGAAGTTTTATTACGTGGTGCTTTTGGTCTTGGTGGCGCTGGTTTAGTTCTTAATGAGCCTGATGCTGTTTCCTTTTTTAAAGCAATGCGTGCTTTTGGTTCTGGTTACTATAGAAACGACCATGAAAGTAATCTAGTAATTCCTAAGTATTCTGCGGGATTCTATTCTAAAACTGCGGATACCCATACATTTATTTGTTCTGCTTATGGTAGCGGTGCTACTTTTGTTGGTACTGTTAATGATGCTCAATTAGATGGAGAATCACCAGTAATAAATACAAATATACTGTATGGTACGGCTAATAAACCAGACTTAACTAATGATACTACAGGTATCTTACCCGTTGCTAGAGGTGGTACTGGTGCTGACACTCCTGAACAAGCTCGTGAAAATTTAGGAGTTGGTGCTATAACTAAGTTCGGTGGATACACTGCAGTTCAGTCTCCAAATAAAACCCATAGATTAGCTCTGGGTGATGATGGCGTATTTGTGTGGCAGACTGCTGAAGGTGCTACTGTTCCATTTCCTGTTAATGTTGGTGGTACAGGAGCTATTACTGTAGAGGGTGCTAGAGATAACCTCGGTCTTGGTAAACTTCAAACTCCTAGATTTGCACATTTAGATCTTGTTGTTGGTATAGAAGGTGATGGTAATGGTGGTATACTAAATTTAAATAAAGTTAATGGATCAGAAGTCACTACTTCACAATCACGTATATATCACGAAGTACAAGGTGGTAAAGCAAAAACTACTATTCATACTCGTAAAATAGAAGGTGGAGAGAAAAACCACTATCTACAGATTGATGAGGATGGAAACCTTACTAATGTTAATGCCTTAAGATCTGAACATGTTTATACTGGTGGTGTTAGCTCTACTGGATGGATATCTGCTAACCAAAATAATAGAATAGGTTGTATTACTCAAGCTGGTGGTAATAAGGATATATACCTTAGTAATGTTCCTGATGATGGTGCTGGGGGTGGCTGGGTTAACCTAATACAAGGAAACTTCTATAATGGTTGGTGGCAGATGGGTGGGCGTAGAACCGGTAGCGACTCACTACAGAATGCGGAGATTAGAGTTAATAGTGGTAAGGGACAGGAAGGTTGGTTTGTTTTTAACCCAAACGGACGTTTAGTTGTTAGTCAAGGATTTAATGCCTATGCCCCTGCAAACACTCCAATGTTAAGAATGGAAGGTACTGCTACAGGTGAAACAGGATGTTTTGCTAGTGGTTTAGTTGCTTCTGGTGGTTGGGTTGACTGGAGAACAAGACCTTGTGGTATGTTGGTAGAATCCCCTGCCACTGATTCAGCTGTTAACGTGTTTAAAGTGGTTAAATGGGGTACTGATTGGGTTACTAGTATGGACTGTATAGCTTGGTCAGCTGGTGGTGCTACTACCCGTATTAACGTGTCTGGTGCTTCTTATGAATTTAACCATGGTGGTACGGCTACTGCCGCCGCATGGGTTAGCAGTTCTGATATTCGCTTAAAAGCTAATCTTAATAAGATAGAAACTGCTCGTGAAAAAGTTAAGTCCCTAGTAGGTTATACATACTACAAGAGGAACAACACTCAAGCAGAGGATGAACATTCTATCTACTCAATAGAGGCCGGACTAATTGCACAGGATGTTCAGCTTGTACTTCCTGAAGCTGTAGAAAAAATAGGTGACTCTGACCTCCTGGGTGTTAACTATGCGGGTGTTACAGCACTATTGGCTAACGCAGTTAACGAGATGAGCGAATTAGTTGAAAGCCAACAGGAAGAGCTAAAGTCTATTAAGGCAGAACTGGCAGAATTAAAAGCTCTAGTAGCCACTCTGGTAAACAAGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
8f05e62a73602a84ff8e9014cb74cb6885cf64bd46f99dc5b71f7237d3bcbbdc
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6544
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Characterization and complete genome sequence of Salmonella phage vB_STy-RN29 Imklin,N. and Nasanit,R. 2022-01-10 — GenBank