Protein

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Genbank accession
XHH73416.1 [GenBank]
Protein name
transferase hexapeptide
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MNEPKHFEKVTIMPNVVIGEGVEIGENSLIYPGVVIADGVKIGKNCILYPRVILYQNTILEDNVIIHAGSVIGGDGFGYAHTALGEHVKIEHVGIVRIQKNVEIGANTAIDRAVFGETLIKEGVKIDNLVQIGHNCVLGEHSIVVSQVGLSGSTTTGRNVVFGGQVGIGGHLHVGEFTQIGGKSAVGKDLPPNTNFAGAIPAMEIHEWHHFLAHLRTNFRKQQKTSLLQKAKGFFKS
Physico‐chemical
properties
protein length:237 AA
molecular weight: 25478,98620 Da
isoelectric point:7,24159
aromaticity:0,06329
hydropathy:0,05907

Domains

Domains [InterPro]
IPR007691
STR
3–224
IPR007691
NF002060
Unmapped
6–231
NF002060
G3DSA:2.160.10.10
STR
7–204
G3DSA:2.160.10.10
IPR001451
STR
8–37
IPR001451 IPR001451 IPR001451
IPR007691
STR
8–209
IPR007691
IPR011004
STR
8–209
IPR011004
IPR007691
STR
8–205
IPR007691
IPR007691
STR
10–226
IPR007691
XHH73416.1
1 237
Architecture
STR
STR 3-226 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XHH73416.1
1 237
Domain Start End Length (AA) Confidence
N-terminal 1 103 103 0,0006
Central domain 104 226 124 0,1397
C-terminal 227 237 10 0,9854
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-103
Central
104-226
C-terminal
227-237

Taxonomy

  Name Taxonomy ID Lineage
Phage Helicobacter phage Pt11417A_1
[NCBI] 		3331671 Viruses >
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XHH73416.1 [NCBI]
Genbank nucleotide accession
PQ159896 [NCBI]
CDS location
range 37332 -> 38045
strand -
CDS
GTGAATGAGCCTAAACATTTTGAAAAAGTAACGATCATGCCTAATGTTGTGATTGGAGAGGGCGTAGAAATTGGCGAAAATTCTTTGATTTATCCGGGCGTGGTGATCGCTGATGGGGTGAAAATCGGTAAAAATTGCATTTTGTATCCTCGTGTCATTTTGTATCAAAACACGATTTTAGAGGATAATGTGATTATCCATGCAGGCAGTGTGATCGGAGGCGATGGCTTTGGTTATGCGCACACCGCTTTAGGAGAGCATGTCAAAATTGAGCATGTGGGGATTGTTAGGATTCAAAAAAATGTGGAAATTGGAGCTAACACGGCGATTGATAGGGCGGTGTTTGGCGAGACTTTGATTAAAGAGGGCGTTAAGATTGATAACCTGGTTCAAATCGGGCATAATTGCGTTTTAGGCGAACACAGCATCGTTGTTTCTCAAGTGGGCTTGAGCGGTTCTACAACCACCGGCCGTAATGTGGTTTTTGGCGGTCAAGTGGGCATTGGAGGGCATTTGCATGTGGGCGAATTCACTCAAATTGGGGGTAAAAGCGCGGTGGGTAAGGACTTGCCTCCTAACACTAATTTTGCCGGAGCGATCCCTGCTATGGAAATCCATGAGTGGCACCATTTCTTAGCCCATTTAAGAACGAATTTCAGGAAACAGCAAAAAACGAGTTTGTTGCAAAAAGCTAAAGGGTTTTTTAAGTCTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
644514d8170f28673aed89ddee1f77251b4be68dfb11117f5c0d6ae522751835
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,9381
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Screening and in silico characterization of prophages in Helicobacter pylori clinical strains Ferreira,R., Pinto,G., Presa,E., Oleastro,M., Silva,C., Vieira,L., Sousa,C., Pires,D.P., Figueiredo,C. and Melo,L.D.R. — — GenBank