Protein

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Genbank accession
USL89778.1 [GenBank]
Protein name
non-contractile tail tubular protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MARPFEGALNDLLQGVSQQVPRERVAGQCSAQVNMLSDPVTGIRRRPGSLFVSVHDFGPIGEGDALYTQYLERGADGRHLVINTNTGGWWLLDREAKTVVNEGNLSYLLAADRRSIQTTSMGGITYILNTEKRPSATTDNSDKKDPKTTGFYFVKSGAFSKEYDLSVVWSLGSQTVTYTTPDGTTAGDADQSVPEAIARKLVEELIAVGVDFAVRVGPYIYFELITGTDLKITSTSGSPYVGYSNQSQVNLETDLPARLHPSADGALCAVGQSERALVWYRYDADKGVWLESGDYNSVTAISVDVPYKIVDDDVEQHIMEGRLAGDDLTNPAPTFLEERRITGIGTFQGRLVLLSGAYVCMSATGEPDRFFRSTVSSLDPTDRIDIASGSAQNSVFRQALQFNKDLILLGDSTQAVVPSLQQLLAPDNASVVLTSDLACNAFVAPVTTSQTLMYPAPRSEAFSAVLELVPSQFTSSQYVSQDVTTHIPRYIEGEARFMQSASAANIVLMATTGDNRQVIAHEYHFTSQGKVHQAWHKWVFPYRVASLHFARDRIVLFAADDTGSTDQITISTIDPKQGGVTFDVDRLPHLDLMSIAPITDGKGIVPIHLRPWVAEGKLTGSVATGTLASEEVAIDVDEITWEFTVEPGFKGSELYLGFRYESLFAPTPPMLKDQNDTLISTSPVRLLRYELTTRNTGEFDVRIVDPTIGLDYSDSTTSLLFGTDDVELGQALVSDLARVPVPCRSNAQSTEMYLSTDGTQDMNILEIEYIIRYNQRRRRV
Physico‐chemical
properties
protein length:780 AA
molecular weight: 85548,89130 Da
isoelectric point:4,78069
aromaticity:0,08462
hydropathy:-0,18769

Domains

Domains [InterPro]
DC_0058
STR
1–780
DC_0058
IPR058003
TTP
9–780
IPR058003
USL89778.1
1 780
Architecture
STR
STR 1-780
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
USL89778.1
1 780
Domain Start End Length (AA) Confidence
N-terminal 1 142 142 0,9912
Central domain 143 341 200 0,0470
C-terminal 342 780 438 0,1755
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-142
Central
143-341
C-terminal
342-780

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage vB_VpaP_M83
[NCBI] 		2950471 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Vibrio parahaemolyticus
[NCBI] 		670 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
USL89778.1 [NCBI]
Genbank nucleotide accession
ON457554 [NCBI]
CDS location
range 24569 -> 26911
strand +
CDS
ATGGCTCGACCATTTGAGGGTGCATTGAATGACCTGCTGCAAGGCGTTTCTCAGCAAGTTCCACGTGAACGTGTAGCTGGACAATGCTCTGCGCAAGTTAACATGCTGTCCGACCCAGTAACAGGTATCCGCCGTCGTCCCGGTAGCCTGTTCGTGAGTGTGCACGATTTCGGCCCGATTGGTGAGGGTGACGCGCTGTACACGCAGTATCTCGAACGAGGTGCTGATGGACGACACTTAGTTATCAATACCAATACAGGTGGTTGGTGGCTCTTAGACCGCGAGGCTAAGACTGTTGTGAACGAGGGCAACTTGTCGTACCTTTTAGCAGCAGACCGTCGCAGTATCCAAACTACCAGTATGGGTGGTATCACGTACATCTTGAATACTGAGAAGCGTCCGTCAGCAACGACTGACAACTCTGACAAGAAAGACCCGAAAACTACGGGCTTCTATTTCGTTAAGAGTGGTGCGTTCAGTAAAGAGTATGACTTATCGGTGGTGTGGTCACTTGGTAGCCAAACCGTGACATACACTACACCAGACGGTACAACAGCAGGTGATGCAGACCAATCTGTACCCGAGGCAATTGCACGTAAACTCGTGGAAGAACTCATTGCAGTTGGTGTTGACTTCGCTGTACGTGTTGGCCCGTATATCTATTTCGAATTAATCACAGGTACTGACCTTAAAATCACCAGTACGTCAGGCTCGCCGTACGTTGGGTACTCAAACCAATCACAGGTGAACCTAGAGACTGACCTCCCTGCGCGTCTGCATCCGTCTGCTGATGGTGCGTTATGTGCTGTAGGTCAATCTGAACGTGCGCTTGTTTGGTATCGCTATGATGCTGACAAGGGTGTGTGGTTGGAGTCTGGGGATTACAACTCTGTAACCGCTATTAGTGTGGATGTGCCCTATAAAATTGTCGATGACGATGTGGAGCAACACATTATGGAGGGGCGTTTGGCTGGTGATGACCTCACTAACCCTGCGCCTACATTCCTAGAGGAACGCCGTATCACTGGTATCGGTACGTTCCAAGGACGCCTAGTGCTGCTATCTGGTGCGTACGTCTGTATGAGTGCAACAGGTGAACCTGACCGTTTCTTCCGGTCTACAGTGAGTTCACTTGACCCAACAGACCGTATCGACATTGCATCCGGTTCTGCACAGAACTCTGTGTTTCGTCAAGCGTTACAGTTCAACAAGGACTTGATTCTACTCGGGGACAGTACGCAAGCGGTAGTGCCGTCATTGCAACAGCTACTAGCCCCAGATAATGCCAGTGTGGTACTTACGTCGGATTTAGCCTGTAATGCGTTTGTAGCACCTGTTACAACCTCGCAGACCTTGATGTACCCTGCACCACGTAGTGAAGCATTCAGTGCTGTTCTGGAGCTTGTACCGTCACAGTTTACATCATCTCAGTACGTATCACAGGATGTCACCACGCATATCCCACGCTATATCGAGGGTGAGGCACGTTTCATGCAAAGTGCGAGTGCAGCTAACATCGTGCTTATGGCAACAACAGGCGATAACCGTCAGGTAATAGCCCACGAGTACCATTTCACGAGTCAAGGTAAAGTGCACCAAGCATGGCACAAGTGGGTGTTCCCATATCGTGTGGCTAGTCTACACTTTGCACGTGACCGTATTGTGTTGTTCGCTGCTGACGATACTGGTAGCACAGACCAAATCACCATCTCAACCATCGACCCTAAACAGGGTGGTGTGACATTTGATGTTGACCGACTACCTCACCTAGACCTGATGAGCATCGCGCCTATCACCGACGGTAAAGGTATCGTGCCAATCCATCTACGTCCTTGGGTGGCTGAGGGTAAATTAACAGGCTCTGTGGCAACAGGTACATTAGCATCTGAGGAAGTGGCAATTGATGTGGATGAGATTACGTGGGAGTTCACTGTAGAGCCGGGCTTTAAGGGTTCAGAGCTTTACTTGGGTTTCCGTTACGAATCTCTGTTTGCACCTACACCGCCTATGTTGAAAGACCAGAATGACACCTTAATCAGCACATCTCCGGTTCGCCTATTGCGTTACGAGTTAACTACCCGTAATACAGGTGAGTTCGATGTCCGTATCGTTGACCCTACTATCGGGCTGGACTACTCAGACAGTACAACCAGTTTGCTGTTTGGTACAGATGACGTTGAGTTAGGTCAAGCCTTAGTGTCTGACTTAGCACGTGTCCCAGTACCGTGCCGCAGTAATGCTCAATCCACTGAGATGTACTTGAGTACTGACGGTACACAGGATATGAACATTCTGGAAATTGAATACATCATTCGTTACAACCAACGCCGTCGTCGCGTATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
d5d745c5e10c7e687719e7fcaf3eb346a2bf3ec01505f399cd1df956d81ef901
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,2944
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50