Protein

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Genbank accession
YP_011372093.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence RBPdetect
Probability 0,61
TF
Evidence RBPdetect2
Probability 0,89
Protein sequence
MIKFHKVSGKPAKVESGDENIWFSYPNGIYVADNQGNPRLISPGKMIGDAVPVGVPNEPGLFYYNTSNKKNYISTAEKWVEIGTGSIPGTGGGSNIAGNVLINDTADNYTSVDVEGALAEIAEKFPWYFGRMQLKDFNGDVNTLLKSTENYITTTAANRPNGKTGWLIQRKASNNNTYGFVIGDDGTAQTRVNDRFTPLAAQSDLAKLQNTVDSSLGELKVNVGKGLASDGKTLANGQTISLAQDILDKIDAAGAGANFVKKAGDTMTGSLVMKAGSGQVSQVQFSSTGSANNVAILDDPRGTSKNSPYGGKEGGSRFRIANVRKNVDIMSAYSDGSVDIHAHGPRAVFGNVSTNGRTTILNNNNNGGTSVDIVAPFSNVPLFVKGKNGQLHYKVNGGMNSLLSGNSSGGRKNLRIAGMGSNSELATLYFEAWNTRAKGKIHSGSAINVGFNHETSKGTGDGDVCLRIFPRKAGLNGERNALRNYAVLYYEQYSQTLVVDSFKGNANFTSNERNNFVRLSSDGFITRSSVKYKNPIKKFEEDALSKVKEVTPELYAYKNDPKQSTQLGFIIEHGLPQEVVEMEGRGVNAYALTAYLWRATQQLSQEVDSLKEELENLRNS
Physico‐chemical
properties
protein length:620 AA
molecular weight: 66784,61340 Da
isoelectric point:8,97408
aromaticity:0,08226
hydropathy:-0,47710

Domains

Domains [InterPro]
DC_1220
STR
4–620
DC_1220
Coil
Unmapped
600–620
Coil
YP_011372093.1
1 620
Architecture
STR
STR 4-620
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_011372093.1
1 620
Domain Start End Length (AA) Confidence
N-terminal 1 269 269 0,9198
Central domain 270 468 200 0,0579
C-terminal 469 620 151 0,9951
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-269
Central
270-468
C-terminal
469-620

Taxonomy

  Name Taxonomy ID Lineage
Phage Enterococcus phage EF1
[NCBI] 		2025813 Uroviricota > Caudoviricetes >
Host Enterococcus faecalis
[NCBI] 		1351 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Lactobacillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_011372093.1 [NCBI]
Genbank nucleotide accession
NC_095800.1 [NCBI]
CDS location
range 71167 -> 73029
strand +
CDS
ATGATTAAGTTTCACAAGGTTAGCGGCAAACCCGCTAAAGTAGAATCTGGCGATGAAAATATTTGGTTTTCTTATCCAAATGGTATTTATGTTGCTGATAATCAAGGTAACCCACGATTAATTTCCCCAGGGAAAATGATTGGCGATGCTGTTCCTGTGGGAGTACCAAATGAGCCAGGTCTATTTTATTATAATACATCAAATAAAAAGAATTATATTTCCACCGCCGAAAAATGGGTTGAAATTGGCACCGGCAGTATTCCAGGGACAGGTGGAGGCAGCAACATCGCTGGTAATGTTTTAATCAATGATACCGCCGATAATTATACCTCGGTAGATGTTGAAGGCGCTCTTGCTGAAATCGCCGAAAAATTCCCATGGTATTTTGGCAGAATGCAATTAAAAGATTTTAATGGTGACGTTAATACTCTATTAAAATCCACTGAAAATTATATTACAACTACTGCCGCAAATCGCCCCAATGGCAAAACAGGTTGGCTCATCCAACGCAAGGCTTCTAATAACAATACTTATGGATTCGTCATTGGCGATGATGGCACCGCCCAAACAAGGGTCAACGATAGGTTCACCCCACTAGCGGCCCAATCGGACCTTGCCAAACTACAAAATACTGTTGATTCCTCTCTTGGGGAATTAAAGGTAAATGTAGGAAAGGGATTAGCTTCTGATGGAAAGACATTGGCAAATGGACAAACTATTTCATTAGCACAAGATATTTTAGATAAAATTGATGCCGCCGGAGCTGGAGCTAATTTTGTTAAAAAAGCTGGAGATACTATGACTGGTTCTCTAGTAATGAAAGCTGGTTCTGGGCAGGTTTCTCAAGTACAATTTAGTAGTACAGGTTCTGCTAATAATGTGGCAATATTGGATGACCCAAGAGGAACGTCCAAGAATTCTCCTTATGGAGGAAAAGAAGGCGGTTCTCGTTTTAGAATTGCTAATGTGAGGAAGAATGTCGATATCATGTCAGCTTATAGCGATGGGTCGGTTGATATTCATGCACATGGTCCTCGTGCGGTATTTGGTAATGTAAGTACTAATGGACGAACTACTATTTTGAATAATAATAATAATGGTGGGACTTCAGTTGATATCGTTGCGCCTTTTAGTAACGTTCCATTATTTGTTAAGGGTAAAAATGGACAGCTACATTATAAGGTTAATGGTGGAATGAATAGTTTGCTTTCTGGTAACAGTAGCGGTGGTCGTAAAAATTTACGTATTGCTGGTATGGGAAGTAATTCTGAATTGGCTACATTGTATTTTGAAGCATGGAATACAAGAGCTAAAGGTAAAATTCATTCTGGGTCAGCTATTAATGTTGGTTTTAACCATGAAACTTCTAAGGGTACTGGTGATGGGGATGTATGTTTACGTATCTTCCCAAGAAAAGCTGGGCTTAATGGTGAGAGAAATGCTTTGAGAAACTATGCTGTATTATATTATGAGCAATATAGTCAAACTTTAGTTGTTGACTCATTCAAGGGTAATGCAAACTTTACAAGCAATGAACGTAATAATTTTGTACGTTTATCTTCTGATGGTTTTATTACACGTTCTTCTGTAAAATATAAGAATCCTATTAAGAAATTTGAAGAAGATGCTTTATCAAAAGTTAAAGAAGTTACACCTGAATTGTATGCTTATAAAAATGATCCAAAACAAAGTACTCAATTAGGATTTATTATTGAGCATGGTCTTCCCCAAGAGGTAGTAGAAATGGAAGGGCGAGGCGTGAACGCTTATGCGCTGACAGCTTATTTATGGAGAGCGACACAACAACTGTCTCAAGAAGTAGATTCATTAAAAGAAGAATTGGAAAATTTAAGAAATAGTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
c5a087e5e4a7dc7735836c4398ae6dfedc71d8771ff9eee8c48424cfee5ce67e
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5902
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete Genome Sequence of Lytic Bacteriophage EF1 Infecting Enterococcus faecalis Isolates Kim,D., Kim,Y.J., Han,B.K. and Kim,H. 2012-03-15 — GenBank