Protein

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Genbank accession
YP_009146168.1 [GenBank]
Protein name
tail assembly protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MRLYQFSRGAIRWSYNSSDRDITYQNQIFRTVPGGITDNGIICSGDPQSDQFVITAPADLDVALLYKTRSPSGAIDLVVYDMHYGDAEAAVSWVGQIGDVDWPTVDSCRITCVSEDELMDQPGLIDTYCRTCTAVVGDHRCKVNLVPYRVTLTPQSISGWVISSGVVAGYADGWFTGGYVEWQVDGDNYDSRYIERHAGPDLYILGGTEGIPAGGQLRVYPGCDGLAQTCDDKFSNLPNFRGFNAMQGKSPFDGDQVW
Physico‐chemical
properties
protein length:258 AA
molecular weight: 28347,19180 Da
isoelectric point:4,37412
aromaticity:0,11240
hydropathy:-0,24961

Domains

Domains [InterPro]
DC_0733
STR
1–172
DC_0733 IPR018964
IPR011928
Unmapped
4–256
IPR011928
PF09931
ATT
17–144
PF09931
YP_009146168.1
1 258
Architecture
STR
ATT
STR
RBD
STR 1-16 | ATT 17-144 | STR 145-172 | RBD 173-249 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009146168.1
1 258
Domain Start End Length (AA) Confidence
N-terminal 1 256 256 0,7618
Central domain 257 256 1 0,1075
C-terminal 257 258 1 0,7412
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-256
Central
257-256
C-terminal
257-258

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage LPB1
[NCBI] 		2994047 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009146168.1 [NCBI]
Genbank nucleotide accession
NC_027298 [NCBI]
CDS location
range 31553 -> 32329
strand +
CDS
GTGCGGCTGTACCAGTTCAGCCGTGGAGCGATCCGCTGGAGCTACAACAGCAGCGACCGGGACATCACCTACCAGAACCAGATTTTCCGCACCGTGCCGGGCGGCATCACCGACAACGGAATTATCTGCTCCGGCGATCCGCAGTCCGACCAGTTCGTCATCACCGCGCCGGCCGACCTCGATGTCGCGCTGCTGTACAAGACCCGGTCACCGAGCGGTGCCATCGACCTGGTCGTCTACGACATGCACTACGGCGACGCCGAGGCAGCGGTTTCTTGGGTAGGCCAGATTGGCGATGTGGACTGGCCGACCGTGGATAGCTGCCGCATAACGTGCGTGTCCGAAGACGAACTGATGGACCAGCCCGGCTTGATCGATACCTACTGCCGCACCTGCACGGCAGTCGTTGGCGACCATCGCTGCAAGGTCAACCTCGTTCCGTATCGCGTGACGCTGACGCCGCAGAGCATCAGCGGCTGGGTGATCTCCAGCGGCGTGGTCGCCGGCTATGCCGATGGCTGGTTTACCGGAGGCTACGTCGAGTGGCAGGTGGACGGCGACAACTACGATAGCCGCTACATCGAGCGGCACGCCGGACCCGATCTTTACATCCTGGGCGGCACCGAGGGCATTCCGGCAGGTGGCCAACTGCGGGTTTATCCGGGTTGCGACGGGCTCGCGCAAACCTGCGACGACAAATTCAGCAACCTCCCCAACTTCAGGGGGTTTAACGCGATGCAAGGCAAGTCGCCGTTCGATGGCGATCAGGTCTGGTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
8d7c4c23b5c924ae599ef67f705943ba997b3d28cc747a42854d110d55423520
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,9189
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genome and proteome analysis of LPB1, a D3112-related Pseudomonas phage Lammens,E., Ceyssens,P.J., Peeters,L.M., Noben,J.P. and Lavigne,R. 2023-04-24 — GenBank