Protein

View in Explore
Genbank accession
YP_010648382.1 [GenBank]
Protein name
neck protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,94
Protein sequence
MKLYIDFPIELGQNFRYKTVENFKRILDNYKYLNEDMKYHREEEKHAHNSKQIDYKLSNVHDELTYQDGRIEGLVIGHNGDGIEEIKDSRTALDGTNQPLLSKRLKYDFEIIKNKMEENFNYLNKKIERIVNVNDYGADPTGEQDSTKAFKQAVRGGNVHVHMTAGTYKVTGIKLPNNTVLSGEGKDITTIKFADETPAENIVITNEDMSGNAHNIGIKDFTVNGNKWRQNKKFNAAGGSLSSNVRFAGVKHGFANNIKSIDALLHGFDITYASDDYFYQGDGVRVNEALESKYIHIDNCEASGFGDEGITTHHSRYLLITNNYLHHATGGGNNNGIEIDDGSQHIMLDNNKTEMNYGGVEVKAHAPASAPNNVLISNHMSIHDSRAYNLRHIGHHRAGDPKSKTAHSLMLNNCTAIEPYDNKVYPNTTPRALVISAYRNVQINNFSAVGDGKFTANQPVIAVQFMAENVMFNGINVTGFKNASTDIKLFGGKNRGKKFTITNANIWNSSQNIGIAGGAGLYDIRIINANIQGQGTGNGIELYNHTAEIIGCHADNYKNPAVIGGNPYSTVPTFLKGGFNGGTTGSSALSNRSAIFASTGGSFAHSARSWVAGSGANSHAWGSRSAVLNSLESETTNGNHTQTILNSRGMKVDKNYTVAMGYGTDGPSTENTGIEFRPISGNAYFKGKITSGNSTGDYAEYFESQSGQEIPNGYLVTLDGRYVRKANLNDTPIGVISGTAGVILGDQMFHHKEKFLKDEFGVTQTEWTTKEWQDDEGKWYSEEVELPIPNPDWKESDNKYIDRSQRPEWNVVGLVGQVYTRIDSTVSENDYIKPNKGIGTKDNNNGFYRVLEITTPYDNEKGYGVAVVLIK
Physico‐chemical
properties
protein length:871 AA
molecular weight: 96111,32150 Da
isoelectric point:6,21827
aromaticity:0,09300
hydropathy:-0,61137

Domains

Domains [InterPro]
DC_0125
ATT
1–344
DC_0125 DC_0616 IPR021865
IPR012334
STR
114–576
IPR012334 G3DSA:2.160.10.20 G3DSA:2.40.300.10
IPR011050
STR
128–452
IPR011050 IPR006626 IPR006626 G3DSA:4.10.80.40
IPR024535
ENZ
130–360
IPR024535
IPR006626
Unmapped
199–220
IPR006626 IPR006626 IPR006626 IPR006626 IPR006626
YP_010648382.1
1 871
Architecture
ATT
STR
RBD
ATT 1-344 | STR 345-642 | RBD 643-871
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_010648382.1
1 871
Domain Start End Length (AA) Confidence
N-terminal 1 145 145 0,9912
Central domain 146 656 512 0,9761
C-terminal 657 871 214 0,9011
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-145
Central
146-656
C-terminal
657-871

Taxonomy

  Name Taxonomy ID Lineage
Phage Staphylococcus virus IME1354_01
[NCBI] 		3070820 Uroviricota > Caudoviricetes > Zhangqianvirus >
Host Staphylococcus sp.
[NCBI] 		29387 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Bacillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010648382.1 [NCBI]
Genbank nucleotide accession
NC_070727 [NCBI]
CDS location
range 35205 -> 37820
strand +
CDS
ATGAAACTATATATAGACTTCCCTATTGAACTAGGTCAAAATTTTAGATATAAAACAGTAGAAAACTTTAAACGTATCTTAGATAACTATAAGTATCTTAATGAAGATATGAAGTATCATAGAGAAGAAGAAAAACATGCTCACAACTCAAAACAGATTGATTACAAGCTCTCAAATGTTCATGATGAATTGACTTATCAAGATGGACGTATTGAGGGCTTAGTTATTGGTCATAATGGTGACGGTATAGAAGAAATTAAAGATAGTAGAACAGCTTTAGATGGTACTAATCAACCTTTACTATCTAAGCGTTTAAAATATGATTTTGAAATCATTAAAAACAAAATGGAAGAAAATTTTAATTATCTTAACAAGAAGATTGAACGTATTGTAAACGTCAATGATTACGGTGCAGATCCAACAGGTGAACAAGATTCTACTAAAGCTTTTAAGCAGGCTGTACGAGGTGGCAACGTTCACGTTCATATGACAGCAGGTACTTACAAAGTTACTGGAATTAAATTACCAAATAACACTGTATTATCAGGTGAAGGTAAAGATATTACTACAATTAAATTTGCAGATGAAACACCTGCTGAGAACATTGTAATTACTAATGAAGATATGTCAGGCAATGCTCACAATATCGGTATCAAAGATTTTACAGTCAACGGCAATAAGTGGAGACAGAACAAGAAGTTCAATGCGGCAGGAGGATCATTATCGTCTAACGTTAGGTTTGCTGGTGTTAAACATGGCTTTGCAAACAACATTAAATCAATTGATGCATTATTACATGGTTTTGATATTACTTATGCCAGCGATGATTATTTCTATCAAGGTGATGGAGTAAGAGTTAATGAAGCTTTAGAAAGTAAATACATTCATATTGATAACTGTGAAGCTAGTGGTTTTGGTGATGAAGGTATTACTACCCACCACTCAAGATATTTGTTAATCACTAATAACTACTTGCATCATGCTACAGGTGGTGGCAATAATAACGGTATTGAAATAGATGATGGTTCACAGCATATAATGTTAGATAATAACAAAACTGAAATGAACTATGGAGGAGTAGAGGTTAAAGCCCATGCTCCAGCTTCAGCTCCTAATAATGTTTTAATCAGTAACCACATGTCTATTCATGATTCAAGAGCATATAACTTACGTCACATTGGACATCATAGAGCAGGAGACCCTAAATCTAAAACAGCACACAGTTTAATGTTAAATAATTGTACAGCAATCGAACCTTATGATAATAAAGTTTATCCAAACACAACACCAAGAGCATTAGTTATTTCTGCTTATAGAAACGTACAAATTAATAACTTTAGCGCAGTTGGTGATGGTAAATTTACAGCAAATCAACCAGTTATCGCCGTACAATTTATGGCAGAAAATGTTATGTTTAACGGCATTAACGTAACTGGTTTTAAAAATGCTTCCACTGATATTAAATTATTTGGTGGTAAAAATAGAGGTAAAAAATTTACTATTACTAATGCAAATATTTGGAACTCATCTCAAAATATTGGTATAGCTGGTGGCGCGGGATTATATGATATCCGGATCATTAATGCAAATATACAAGGACAAGGAACAGGTAATGGTATAGAGTTATATAACCATACCGCTGAAATAATTGGTTGTCACGCAGATAATTATAAAAATCCAGCAGTAATTGGTGGAAACCCTTATTCTACAGTGCCTACTTTCTTAAAAGGTGGATTTAACGGAGGCACAACGGGTTCTTCTGCTTTATCTAACCGTTCTGCAATATTTGCTTCTACTGGTGGTTCGTTTGCACACAGCGCTCGTTCATGGGTAGCTGGCTCTGGTGCTAATTCACATGCATGGGGTTCACGTAGTGCTGTACTTAACTCATTGGAATCAGAAACTACTAATGGAAATCATACACAAACAATATTGAACTCAAGAGGTATGAAAGTAGATAAAAACTACACTGTAGCAATGGGCTATGGTACAGATGGGCCTTCAACAGAAAACACAGGTATAGAATTTAGACCTATTAGCGGCAATGCATATTTCAAAGGTAAAATAACTTCAGGAAATAGCACAGGTGACTATGCAGAGTATTTTGAATCTCAATCAGGACAAGAAATCCCTAACGGATATTTAGTTACACTCGATGGAAGATATGTCCGAAAAGCTAACTTAAACGATACACCTATCGGAGTTATTTCAGGGACAGCAGGAGTTATTCTTGGTGACCAAATGTTCCACCATAAAGAAAAATTCTTAAAAGATGAATTTGGTGTTACACAAACTGAATGGACTACTAAAGAGTGGCAAGATGATGAAGGTAAGTGGTACTCAGAAGAAGTAGAACTTCCTATCCCTAACCCTGATTGGAAAGAATCAGATAATAAATATATAGACCGTTCGCAACGTCCTGAATGGAACGTAGTAGGTCTTGTAGGGCAAGTATATACTCGTATTGATTCAACAGTATCAGAGAACGACTATATCAAACCCAATAAAGGTATCGGTACTAAAGATAATAATAACGGTTTCTATAGAGTGTTAGAAATAACTACGCCGTATGATAATGAAAAAGGCTATGGTGTAGCAGTAGTGTTAATCAAATAG

Genome Context

Genome Context

Tertiary structure

PDB ID
f351c72feb5ff19534ff4c7cf74757d0a46456bf88c6f5d710f537a0f73ffea3
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7631
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Analysis of active prophages from bacterial high-throughput sequencing data Sun,Q., Zhang,X., Xing,S. and Tong,Y.-G. 2018-12-28 — GenBank