Protein

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Genbank accession
ALM62156.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
Protein sequence
MIIPTYITPTTGGGRLYADAVTSLTPQYSATPTKYPISSKTQIVNNIIRQNPILNMSLFVGKHPLKSFSDSIIGYEDLTQRPTSTHEVLLNWYNNSTQLFVYNEFFQFDSYVITNYTPKQFEAYDTLQFDLTLEHLRFVSYERGTLITFMDASKTTDSTAKSNQSDSSSKENISNLSQKEKVLKTYGEQFGNLLNLIDKETTSGN
Physico‐chemical
properties
protein length:205 AA
molecular weight: 23252,70440 Da
isoelectric point:5,60622
aromaticity:0,11707
hydropathy:-0,45561

Domains

Domains [InterPro]
DC_0628
STR
5–204
DC_0628
IPR048494
ATT
19–145
IPR048494
ALM62156.1
1 205
Architecture
STR
ATT
STR
STR 5-18 | ATT 19-145 | STR 146-204 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage qdvp001
[NCBI] 		1003177 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Vibrio parahaemolyticus
[NCBI] 		670 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
ALM62156.1 [NCBI]
Genbank nucleotide accession
KT932418.1 [NCBI]
CDS location
range 94666 -> 95283
strand +
CDS
ATGATCATACCTACTTATATCACACCAACAACAGGTGGGGGTAGATTGTATGCAGATGCCGTAACTAGTCTTACGCCACAATATTCAGCAACTCCCACAAAATACCCGATCAGTTCGAAAACGCAGATCGTAAACAACATTATTCGTCAGAACCCAATACTCAATATGTCTTTGTTTGTCGGTAAGCACCCGTTAAAGTCTTTCTCTGACAGTATTATAGGGTATGAAGATCTCACACAGAGACCAACATCCACGCATGAAGTACTCTTAAACTGGTACAACAATTCAACACAACTATTTGTTTACAATGAATTTTTTCAATTCGATTCCTATGTAATAACGAACTATACTCCTAAGCAATTTGAAGCATACGATACCCTTCAGTTTGATTTAACACTTGAACACTTGCGTTTTGTTAGTTACGAAAGGGGTACTTTAATAACTTTCATGGATGCTTCTAAAACAACTGACTCTACTGCTAAATCTAATCAAAGTGATAGCTCTTCAAAGGAAAATATAAGTAACTTATCACAGAAAGAAAAAGTATTAAAAACTTACGGGGAGCAGTTTGGTAATCTTTTAAACTTAATTGATAAGGAGACAACAAGTGGCAATTAG

Genome Context

Genome Context

Tertiary structure

PDB ID
29cd67959cbba3533c3f409292bfbabf0842a003389dce355ece956c1bf53ed6
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8055
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequence of Vibrio parahaemolyticus phage qdvp001 Wang,W., Wang,J. and Lin,H. 2016-07-04 — GenBank