Protein

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Genbank accession
AFM54671.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence RBPdetect
Probability 0,74
Protein sequence
MSLENTKLLITPNGYKAGKLYSALPESGAGDSIFERATTATRVNADGLIEEVGLNVPRVDYPVLGGCPSLLLEPQRTNLLSYSEEFDNSIWIKSNAIIDPNATTAPDGTLTADKLVESVGTNNKQIFQLLSSSNKVFTFSVFAKKGERDILQIVLGGSAFEEGAVFANFDLTNATIPLGVFLNAYIISFNDDWYKCTISATPLAAATISVSLQPKPLTTSTRAQFYQGDGTSGVFIWGAQIEQGSTASSYIPTVASSVTRNTDVLSNNMIATVDSTYTALLDVSASDSRLKIEDGTTGFDLPLNGSGRIVMVVDNDITFHFPDSGQATTVLTYAKPSDLRNIDVLSKINETKIKVIAVENGVALQSRIDSWVSGSVSSYFIDTDWSLESSFTTEFIGQDWDYFPLIDTSNGTFFAAAWQNNNLTSFPLIDTSSGASFERAWQGNNLTSFPKLNVDNVTIFNLAWFFNNLTTWLPNYFDNCVGTNFTRAWENNAIDQTGVDNILVSINTARLSGVQTGTTKVIGLNGGTNATPSATGQAATDALRADGWTVNLNGY
Physico‐chemical
properties
protein length:555 AA
molecular weight: 59893,92760 Da
isoelectric point:4,39277
aromaticity:0,10090
hydropathy:-0,05820

Domains

Domains [InterPro]
DC_0353
STR
15–542
DC_0353
NF048003
Unmapped
71–261
NF048003
AFM54671.1
1 555
Architecture
STR
STR 15-542 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AFM54671.1
1 555
Domain Start End Length (AA) Confidence
N-terminal 1 251 251 0,1033
Central domain 252 488 238 0,4692
C-terminal 489 555 66 0,9557
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-251
Central
252-488
C-terminal
489-555

Taxonomy

  Name Taxonomy ID Lineage
Phage Nonlabens phage P12024S
[NCBI] 		1168478 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Nonlabens
[NCBI] 		363408 Bacteria > Bacteroidetes > Flavobacteriia > Flavobacteriales > Flavobacteriaceae >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AFM54671.1 [NCBI]
Genbank nucleotide accession
JQ823122 [NCBI]
CDS location
range 6549 -> 8216
strand +
CDS
ATGAGCTTAGAAAATACAAAATTACTAATAACGCCAAACGGTTACAAAGCTGGTAAGTTGTATAGTGCCTTACCAGAAAGCGGGGCGGGCGATTCTATATTTGAAAGAGCAACAACGGCAACGCGTGTAAATGCTGATGGGCTTATAGAGGAGGTCGGTTTAAACGTTCCTAGAGTTGATTACCCTGTATTGGGTGGATGCCCTAGTTTATTGTTAGAACCGCAAAGGACTAATTTGCTTAGTTATAGTGAGGAGTTTGACAATTCGATTTGGATTAAATCTAATGCAATAATTGATCCTAATGCCACAACTGCGCCTGATGGCACATTGACTGCTGATAAACTAGTTGAGTCAGTAGGTACAAATAATAAACAGATTTTTCAACTTCTATCATCATCAAATAAAGTATTTACCTTTTCTGTTTTTGCAAAAAAAGGAGAGCGTGATATATTGCAAATAGTGTTAGGTGGATCAGCTTTTGAAGAAGGTGCAGTTTTTGCAAATTTTGATTTAACAAATGCAACTATACCGCTAGGTGTTTTTTTAAATGCTTATATAATTTCTTTTAACGATGATTGGTATAAATGTACTATTAGTGCAACACCATTAGCAGCTGCAACAATAAGTGTATCTTTACAACCAAAACCATTGACAACATCTACAAGAGCTCAATTCTATCAAGGCGATGGTACAAGCGGTGTTTTTATATGGGGCGCACAAATAGAACAAGGATCAACTGCAAGTTCCTACATACCAACAGTAGCAAGTTCGGTAACACGCAACACAGACGTTTTAAGCAACAATATGATCGCCACGGTAGATAGTACCTATACCGCTTTATTAGACGTAAGCGCAAGCGATAGCAGGCTTAAGATAGAGGATGGCACTACTGGTTTTGATTTGCCATTAAACGGATCAGGAAGGATAGTTATGGTCGTGGATAATGACATTACTTTTCACTTTCCAGATAGCGGACAAGCTACAACGGTGCTTACCTATGCAAAGCCTAGTGATTTGCGAAATATAGATGTATTAAGCAAAATTAACGAGACTAAAATAAAGGTAATAGCCGTAGAAAATGGAGTTGCTTTGCAGTCGCGCATAGATAGTTGGGTAAGTGGTAGTGTTAGTAGTTACTTTATTGACACTGATTGGAGTTTAGAGAGTAGTTTTACGACTGAGTTTATAGGTCAAGATTGGGATTATTTTCCTTTGATTGATACAAGTAACGGAACTTTTTTTGCTGCTGCATGGCAAAATAACAATTTAACGTCATTCCCTTTGATTGATACAAGTAGTGGTGCTAGTTTTGAAAGAGCATGGCAAGGTAACAATTTAACTTCATTCCCTAAATTAAACGTGGACAATGTAACTATATTTAATTTGGCATGGTTTTTCAACAACCTTACAACATGGCTTCCTAACTACTTTGACAATTGCGTAGGCACTAACTTTACTAGAGCATGGGAAAACAACGCAATAGACCAAACAGGAGTTGATAACATTTTAGTAAGCATTAACACTGCAAGACTTTCAGGCGTGCAAACAGGAACAACTAAAGTAATAGGGCTTAATGGTGGCACAAACGCAACACCGAGCGCAACGGGGCAAGCGGCAACAGATGCACTTAGAGCAGATGGATGGACAGTAAATTTAAACGGATATTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
55cf6fbfc833c5ca6dafa795524827ee0bd0174770950a59c2ac76faa76e86a3
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7426
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete Genome Sequences of Two Persicivirga Bacteriophages, P12024S and P12024L Kang,I., Jang,H. and Cho,J.C. 2012 22843864 GenBank