Protein

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Genbank accession
YP_003714745.1 [GenBank]
Protein name
gp38
RBP type
TSP
Evidence RBPdetect
Probability 0,57
Protein sequence
MALFPLDIRTELKLGATWMDISSDVLQRDVKNITRGVRDQGSTADPASLSLTLNNRSGKYSVRNAESPLYGLIGRNTQVRLSVPTTGDSYLNLDGLAGNFASTPDVAALNITGDLDVRIEMAPNWYGAENQVVIGKWAPGQASWMVQVYNGTVIFRYTTTGTEPSPTLAYTRPLPTLPERAALRVTLDVDDGSGNHVTTFYWAPTLAGPWTPIGNPAPYAGTAPMFAGSAPLRIGLDDFRPNTTTPRLPMVGRVYRAEVRSGIDGTIVASPDFRGLADRTTSFTDSSGRSWSTVGGAEIRHREDRFVGEISTWPLKWTADASDIWTSVRAAGILHRLGQGTKDLDSTLRRRIPSGKPIAYWPMEDASDATRAYSPIPGVQPASVSGVEWAAAGDLPSSNPLPVLGQAGNLTAPIPGTMPSGEWQVEFVYNADDKAPPYPGEEAPFIAASSPNGAVRRWEISMQRTRVHIRGYNAGGTALVGIYMGAGDDIFHGWTRLRLYAKDQGDGTFIWRIAFQDVGGDAGGISGTVTGSCGRLSAVTANWGPLTEGWSIGHLTVLPVAGSGLMNGSDDAFSGESAWDRLARLGREEGLSIGRIPGQLPPQRVGPQRPAKLIDLLESVADSDGGWLTESPRRVGLTYRDRSSAYGQEPALTLSYIAPGLSDGLEPVDDDSAIRNDITVTRDGGSSARAYEASGPLSVLPPPNGIGIYDEGVTLSLSDDTQPEPIANWRLHLGTFDGARYPVVTVTLHKTGAEGLLPQVLGLREGDVIRLTNLPKWLSHADVDLIVMGWTESLELYRWTIEFNCLPGGPWDTAKVNVVHEDFEDDNYAIPLAAAGSLPWVRSTAHAHTGTSALKSGAITNNQTSDAVLSLPAGVTELSFWYFTNSENFGTGFTGDYLTVLADGVEVLRAQGSTPWTKKTLNVTGVSTIVFRYRKDNSAASGEDAVWIDNLRMVYGTYRAAKVQTDGSTLTAPVNATATSLTVASPAAPWTTNPIDLPIPITVDGEVMSVTAINVDTSPQIFTVTRSVNGVSKSHLAGASVTLARPAVAPL
Physico‐chemical
properties
protein length:1051 AA
molecular weight: 112330,43360 Da
isoelectric point:5,08450
aromaticity:0,07992
hydropathy:-0,19134

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_003714745.1
1 1051
Domain Start End Length (AA) Confidence
N-terminal 1 389 389 0,3794
Central domain 390 588 200 0,3949
C-terminal 589 1051 462 0,3484
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-389
Central
390-588
C-terminal
589-1051

Taxonomy

  Name Taxonomy ID Lineage
Phage Streptomyces phage phiSASD1
[NCBI] 		747763 Uroviricota > Caudoviricetes > Sasdunavirus >
Host Streptomyces avermitilis
[NCBI] 		33903 cellular organisms > Bacteria > Bacillati > Actinomycetota > Actinomycetes > Kitasatosporales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_003714745.1 [NCBI]
Genbank nucleotide accession
NC_014229 [NCBI]
CDS location
range 11644 -> 14799
strand +
CDS
GTGGCACTCTTCCCGCTGGACATCCGCACTGAACTTAAGCTGGGCGCCACCTGGATGGACATCAGCTCCGATGTCCTCCAGCGTGACGTCAAGAACATCACGCGCGGTGTCCGTGACCAGGGTTCAACCGCGGACCCCGCATCACTGTCCCTCACTCTCAACAACAGGTCTGGCAAATACTCCGTCCGCAACGCGGAGTCCCCGCTGTACGGCCTGATCGGACGCAACACCCAGGTCCGCCTCTCCGTCCCCACCACGGGCGACAGTTACCTGAACCTGGACGGCCTGGCGGGCAACTTCGCGTCGACTCCTGACGTCGCTGCCCTGAACATCACGGGTGACCTTGACGTTCGGATCGAGATGGCCCCCAACTGGTACGGGGCCGAAAACCAGGTCGTGATTGGCAAGTGGGCTCCTGGCCAAGCCAGTTGGATGGTGCAGGTCTACAACGGTACCGTTATATTCCGCTACACGACTACGGGCACGGAGCCTTCGCCCACGCTTGCCTACACGCGCCCTCTGCCCACCCTCCCCGAGCGCGCCGCACTGCGCGTCACGCTGGACGTGGACGACGGTTCGGGCAACCACGTGACCACGTTCTATTGGGCCCCGACGCTGGCCGGCCCGTGGACCCCGATCGGCAACCCTGCCCCCTACGCAGGTACGGCGCCTATGTTCGCCGGAAGTGCTCCTCTCCGCATCGGACTGGACGACTTCCGTCCCAACACCACCACTCCGCGACTTCCCATGGTCGGTCGTGTGTACCGCGCTGAGGTCCGGAGCGGCATTGACGGCACGATCGTGGCGTCCCCCGACTTCCGCGGCCTGGCCGACAGGACGACGTCGTTCACGGACTCCAGCGGCCGGAGCTGGTCCACGGTGGGCGGTGCTGAGATCCGTCACCGCGAGGACCGGTTTGTGGGAGAGATTTCCACCTGGCCCCTGAAGTGGACCGCGGATGCGTCGGACATCTGGACGTCCGTCCGTGCCGCCGGCATCCTCCACCGCCTGGGACAGGGCACGAAGGACCTGGACTCCACGCTGAGGCGCCGGATCCCGTCGGGCAAGCCGATCGCGTACTGGCCCATGGAGGATGCGTCCGACGCAACGCGCGCGTACTCCCCGATTCCTGGCGTCCAGCCGGCCTCTGTGTCTGGCGTGGAGTGGGCAGCCGCCGGGGACCTCCCGTCCAGCAACCCTCTTCCGGTCCTGGGCCAGGCGGGCAACCTGACCGCTCCCATTCCGGGCACGATGCCCTCCGGGGAGTGGCAAGTCGAATTCGTCTACAACGCTGACGACAAGGCCCCGCCGTACCCGGGCGAAGAGGCGCCGTTCATCGCTGCCAGCTCCCCGAACGGAGCCGTCCGCCGCTGGGAAATCAGCATGCAGCGCACGCGCGTACACATCCGCGGGTACAACGCTGGCGGCACAGCGCTGGTCGGCATCTACATGGGCGCCGGAGATGACATCTTCCACGGCTGGACACGCCTCCGCCTGTACGCGAAGGACCAGGGAGACGGCACCTTCATCTGGCGGATCGCCTTCCAGGATGTTGGCGGCGACGCGGGCGGTATTAGTGGAACGGTGACCGGGTCGTGTGGCCGTCTGAGTGCGGTCACCGCCAACTGGGGCCCTCTCACGGAGGGTTGGTCCATCGGCCACCTGACTGTCCTGCCGGTAGCGGGTAGCGGCCTGATGAACGGCTCGGATGACGCCTTCAGCGGCGAGTCTGCGTGGGACCGCCTGGCCCGCCTGGGCAGAGAAGAGGGACTGTCCATCGGGCGTATCCCTGGCCAGCTCCCGCCCCAGCGCGTCGGACCCCAGCGGCCCGCCAAGCTGATTGACCTCCTGGAATCCGTCGCTGACTCTGATGGCGGCTGGCTCACGGAGTCGCCCCGCCGCGTGGGCCTGACCTACCGGGACCGGTCCAGCGCGTACGGCCAGGAACCTGCCCTGACCCTCTCCTACATCGCGCCTGGCCTCTCCGATGGCCTGGAACCTGTCGACGATGACAGCGCCATCCGCAATGACATCACTGTCACCCGTGATGGCGGCTCCTCCGCCCGCGCGTATGAGGCGTCTGGCCCGCTGAGTGTCCTGCCTCCTCCGAACGGCATCGGGATCTACGACGAAGGCGTAACGCTGTCGCTGTCTGACGACACCCAGCCGGAGCCGATCGCGAACTGGCGCCTCCACCTGGGCACGTTCGATGGTGCCAGGTACCCGGTCGTCACGGTCACGCTGCACAAGACTGGCGCGGAGGGCCTTCTCCCCCAGGTCCTGGGCCTGCGTGAGGGCGACGTGATCCGCCTGACGAACCTGCCTAAGTGGCTGTCACACGCGGACGTGGACCTGATCGTCATGGGCTGGACCGAATCGCTGGAGTTGTACCGCTGGACGATCGAGTTCAACTGTCTGCCCGGCGGGCCCTGGGACACGGCGAAGGTCAATGTCGTTCACGAAGACTTCGAGGACGACAACTACGCCATCCCGCTGGCCGCCGCTGGTTCCCTCCCCTGGGTCCGGTCGACCGCGCACGCGCACACGGGCACGTCAGCGCTGAAGTCCGGCGCGATCACGAACAACCAGACCAGCGACGCGGTTCTGTCCCTCCCTGCCGGCGTGACGGAGCTGTCCTTCTGGTACTTCACGAACAGTGAGAACTTCGGGACCGGCTTCACGGGCGACTACCTGACCGTTCTGGCGGATGGTGTGGAGGTCCTCCGGGCGCAGGGCTCCACGCCGTGGACAAAGAAGACGCTGAACGTGACTGGCGTGTCCACGATCGTGTTCCGCTACCGGAAGGACAACTCCGCGGCCAGCGGTGAAGACGCTGTCTGGATTGACAACCTGCGCATGGTCTACGGCACGTACCGCGCGGCCAAGGTGCAGACGGACGGGTCCACGCTGACCGCTCCCGTTAACGCCACTGCCACGTCCCTGACGGTCGCTTCGCCGGCCGCTCCCTGGACGACCAATCCGATTGACCTTCCCATCCCGATCACGGTTGACGGTGAAGTCATGTCGGTGACGGCCATCAACGTGGACACGTCGCCGCAGATCTTCACTGTCACGCGCTCTGTGAACGGTGTCAGTAAGTCGCATCTGGCGGGGGCCTCCGTCACCTTGGCCCGCCCCGCTGTCGCGCCCTTGTAG

Genome Context

Genome Context

Tertiary structure

PDB ID
72e5405aec5290c48d65df6fb65195d2909f43dc495260a27aca58649222f147
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,3064
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50