Protein

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Genbank accession
QBX27336.1 [GenBank]
Protein name
lysin
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MVAYLDFKSRVLNNGYDHDGGAFGWQCWDGFAELCEANGIPIINTDPINHTGYAMDLWEQRKTNGMLTYFDEVETMEGGDVAVFKEVAGVTPSSHVAIFDSDIDGVYGWFLGQNQGSTITHPNGGSAFNLVMLPYSATYPTAFRVKKGGKMQVKNINGDIYSNLITSSRSEIFGSWGERDIKFIKYIVLHGTYGLSVQSAVDAWTGGREASAQYIVHDNQIVGCVGENFTAWHCGGTGATTNQNSIGVEHVNNKINGENSTFSAQTIETGAKLVAEICKRLGIVPSNKTIVPHKSVYATACPQAMDVPAYIEKVKQYYNDTTKKPVTATKPQPKETKKETPKPQTKETKKVASNEQTSARLLVFDEDLNGYKKGDYILLNFDRGTYSKVNNKAEVDFIKKQYTGIQTEYVSKGYPAHVRYIQGFKLNKI
Physico‐chemical
properties
protein length:429 AA
molecular weight: 47443,82630 Da
isoelectric point:7,12866
aromaticity:0,10723
hydropathy:-0,43590

Domains

Domains [InterPro]
IPR036505
STR
174–328
IPR036505 DC_2183
IPR002502
STR
176–317
IPR002502
IPR051206
Unmapped
183–344
IPR051206
IPR036505
STR
184–305
IPR036505
IPR002502
STR
184–303
IPR002502
IPR002502
STR
184–302
IPR002502
IPR036505
STR
185–315
IPR036505
QBX27336.1
1 429
Architecture
STR
RBD
STR 174-328 | RBD 374-429
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QBX27336.1
1 429
Domain Start End Length (AA) Confidence
N-terminal 1 75 75 0,5122
Central domain 76 312 238 0,5603
C-terminal 313 429 116 0,5742
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-75
Central
76-312
C-terminal
313-429

Taxonomy

  Name Taxonomy ID Lineage
Phage Streptococcus phage Javan384
[NCBI] 		2548140 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Streptococcus parauberis KCTC_11537
[NCBI] 		936154 Bacillota > Bacilli > Lactobacillales > Streptococcaceae > Streptococcus > Streptococcus parauberis

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QBX27336.1 [NCBI]
Genbank nucleotide accession
MK448924 [NCBI]
CDS location
range 36253 -> 37542
strand +
CDS
ATGGTTGCATACCTTGATTTTAAAAGTAGAGTTTTAAATAATGGTTATGATCATGACGGAGGAGCTTTTGGCTGGCAGTGCTGGGACGGTTTCGCAGAATTGTGCGAGGCAAATGGTATTCCGATTATTAACACTGACCCTATTAATCATACTGGCTACGCTATGGATTTATGGGAGCAACGTAAAACAAACGGCATGCTGACTTATTTTGATGAGGTTGAAACCATGGAAGGTGGTGATGTCGCAGTCTTTAAAGAGGTTGCAGGCGTCACGCCATCTAGTCATGTCGCTATTTTTGATAGTGACATAGACGGCGTTTATGGATGGTTCCTTGGTCAAAACCAAGGCTCTACGATTACGCACCCTAATGGTGGCTCAGCATTTAATCTTGTCATGTTGCCTTATTCAGCAACGTATCCAACAGCATTTAGAGTTAAAAAAGGAGGAAAGATGCAAGTTAAAAATATAAATGGGGATATTTACTCAAACTTAATTACTAGTTCACGTTCTGAAATCTTTGGAAGTTGGGGAGAACGTGACATAAAATTTATTAAATATATTGTATTGCATGGCACATATGGCTTATCAGTACAAAGCGCAGTTGATGCTTGGACAGGTGGAAGAGAAGCAAGCGCACAGTACATCGTACACGACAATCAAATTGTTGGTTGTGTTGGCGAAAATTTCACTGCTTGGCATTGTGGAGGGACAGGCGCAACCACTAACCAAAATAGCATTGGTGTAGAACATGTAAACAATAAAATTAATGGAGAAAATTCCACTTTCTCAGCTCAAACAATTGAAACTGGAGCTAAATTAGTAGCTGAAATTTGTAAGCGCCTAGGAATTGTACCAAGCAATAAAACTATCGTACCTCACAAGTCAGTCTATGCAACTGCATGCCCCCAAGCTATGGACGTACCAGCGTATATTGAAAAAGTTAAACAGTATTACAATGACACGACTAAGAAACCTGTAACAGCAACTAAACCACAACCTAAGGAGACTAAAAAAGAAACACCTAAACCACAAACAAAGGAGACTAAAAAAGTGGCATCCAATGAACAAACTAGTGCAAGGTTATTAGTCTTTGACGAGGACTTAAACGGATATAAAAAAGGTGATTACATATTACTAAATTTTGACCGTGGAACTTATAGCAAAGTAAATAATAAAGCAGAAGTTGACTTTATCAAAAAACAATATACTGGAATCCAAACAGAATATGTAAGTAAAGGATATCCTGCTCACGTCCGATACATTCAAGGATTTAAACTTAATAAGATATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
ca479c37e338d5e51d2f263a231f557425c3b1f28c2db51639244ca93285397d
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7480
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Prophages and satellite prophages are widespread among Streptococcus species and may play a role in pneumococcal pathogenesis Rezaei Javan,R., Ramos-Sevillano,E., Akter,A., Brown,J. and Brueggemann,A.B. 2018-12-20 — GenBank