Protein

View in Explore
Genbank accession
DBA08919.1 [GenBank]
Protein name
central tail fiber J
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,84
TF
Evidence RBPdetect2
Probability 0,95
Protein sequence
MSVVTKKRHQPLRGSKGGSSKPKQPHIAQNGVASLSTARILYLLSWGPIVGPVNGLKSIKLDGTPIQAEDGTLNYPDVKWQFRPGELNQERLEGVAESSNEIAVGQTLLSTQPYIYTVTNATADAVRVRLSWPNLQAQDSSGNINGVRIEYAIDVATDGAPYQTVLSTFVDRKNVTTYYRSHRINLPAGGHWAVRVRRITPEANSSLVQDTMVLTAIAEVVDSNQEFPLTAVGCVEYDAQQFGGDFPKFSALMRGRIVRVPMNYDPETRTYFTGGPGTTNGVWDGTFKEAYSNNPAWVFYDLVLNPYYGLGERIDQSMVNRWALYRIAQYCDQLVPDGKGGQEPRFTCNLYLQKQEEAYAVLQDLAAIFHGLAFWDGSQITVNADMPQDPVYTYTTSQILNDGVVAYSGTRTRDRHSLAMVSWDNPANAFETDKEPVFDEDAIIELGGIVREVSVGALGCTSQGQAQRAGQWALMTEQLQTRGAVWKVGLDGFIPRPGQVVALADPMLAGRANGGRISAVSGRAITVDRDVDIPLGARLRVNLPSGRSEARAIQGLDGRVITVVADFSEEPSPESGWAIDYDDLALMQFYVKNVTRPSWEQFQLEVIQHEPGKFDAIDHGAIIDSRPISVLPSGVQDPPARVLISQHIAVEQGLAVTIMTIAWDAAPDAVAYDVEWRWGSREWVRVPRTGELMVEVRGVYTGQYLARVRAVNSMNVSSIPANSVLTNISGKTGAPPAVAYLRTQSRVFGIGLEWGFPAGAEDTQRTEIWY
Physico‐chemical
properties
protein length:770 AA
molecular weight: 84578,19960 Da
isoelectric point:5,27758
aromaticity:0,08961
hydropathy:-0,23987

Domains

Domains [InterPro]
IPR053171
Unmapped
6–770
IPR053171
DC_0129
STR
35–770
DC_0129
IPR055385
ATT
99–222
IPR055385 IPR032876 IPR036116
DBA08919.1
1 770
Architecture
STR
ATT
STR
ATT
STR
STR 35-98 | ATT 99-222 | STR 223-353 | ATT 354-521 | STR 522-770
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
DBA08919.1
1 770
Domain Start End Length (AA) Confidence
N-terminal 1 521 521 0,9479
Central domain 522 759 239 0,0640
C-terminal 760 770 10 0,0242
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-521
Central
522-759
C-terminal
760-770

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage vB_PaeS-D14Q
[NCBI] 		2969645 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Pseudomonas aeruginosa
[NCBI] 		287 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Pseudomonadales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
DBA08919.1 [NCBI]
Genbank nucleotide accession
BK061590.1 [NCBI]
CDS location
range 22368 -> 24677
strand +
CDS
ATGTCTGTTGTGACCAAAAAGCGCCATCAGCCTTTGCGTGGAAGCAAGGGGGGCAGTTCCAAGCCGAAGCAGCCGCACATCGCCCAGAACGGCGTCGCATCGCTGTCCACTGCTCGGATCCTGTATCTCCTGAGCTGGGGACCGATTGTTGGCCCAGTCAATGGACTCAAGTCGATCAAGCTTGACGGTACTCCGATCCAGGCAGAAGACGGCACGCTGAACTATCCCGACGTGAAGTGGCAGTTTCGACCGGGCGAGTTAAATCAGGAGCGACTGGAAGGTGTAGCGGAGTCTAGCAACGAGATTGCGGTGGGCCAGACCTTGCTCAGCACGCAGCCCTACATCTACACCGTCACGAACGCCACGGCGGATGCGGTACGCGTGCGCCTGTCCTGGCCCAACCTGCAGGCGCAGGATTCGTCCGGGAACATCAATGGGGTGCGTATTGAGTACGCGATCGATGTCGCCACGGATGGCGCTCCTTACCAGACCGTACTCAGCACGTTTGTCGACCGGAAGAACGTTACGACTTACTACCGTTCTCATCGGATCAACCTGCCGGCAGGAGGGCACTGGGCGGTTCGCGTGCGGCGGATCACGCCGGAGGCGAACAGCTCTCTGGTCCAGGACACCATGGTGCTGACTGCGATAGCTGAAGTTGTCGACAGCAACCAGGAGTTTCCGCTCACCGCCGTTGGCTGCGTGGAGTATGACGCCCAACAGTTCGGGGGCGACTTTCCGAAGTTCTCTGCGCTCATGCGCGGGCGGATCGTGCGGGTTCCGATGAACTATGACCCTGAGACTCGGACCTATTTTACCGGCGGCCCCGGTACCACGAATGGCGTTTGGGACGGCACCTTCAAGGAGGCTTATTCCAACAATCCGGCCTGGGTTTTCTATGACCTGGTGTTGAACCCCTATTACGGCCTGGGTGAGCGCATCGACCAGAGCATGGTCAACCGTTGGGCCCTCTATCGCATTGCGCAGTACTGCGACCAGTTGGTTCCGGATGGGAAGGGCGGTCAAGAGCCTAGGTTCACTTGCAACCTCTATCTTCAGAAGCAAGAGGAGGCGTATGCCGTTCTTCAGGATCTCGCTGCAATCTTTCATGGGTTGGCGTTCTGGGATGGTAGCCAGATCACTGTCAACGCCGACATGCCTCAGGACCCGGTTTACACCTATACCACGTCGCAGATTCTGAACGATGGTGTGGTTGCGTATTCGGGGACACGGACGCGAGACCGCCATTCGCTGGCGATGGTCTCTTGGGACAACCCGGCCAATGCGTTCGAGACAGACAAGGAGCCGGTCTTCGACGAGGATGCGATTATCGAGCTTGGCGGGATCGTCAGGGAGGTATCGGTCGGGGCTCTCGGCTGCACCAGCCAGGGTCAGGCGCAGCGGGCGGGGCAGTGGGCGCTTATGACTGAGCAGTTGCAGACTCGTGGGGCCGTCTGGAAGGTTGGCCTGGATGGATTCATCCCTCGCCCTGGGCAGGTGGTGGCTCTGGCAGACCCCATGCTTGCCGGTCGTGCGAACGGCGGCAGGATCTCGGCGGTGTCTGGACGAGCAATCACCGTTGATCGAGATGTGGATATCCCGCTCGGCGCGCGACTGCGGGTCAACTTGCCCAGCGGGCGCTCGGAAGCCAGAGCGATTCAAGGCCTGGATGGGCGCGTCATAACAGTGGTGGCCGACTTCAGCGAAGAGCCTTCCCCTGAGAGCGGGTGGGCGATCGACTACGACGACCTGGCCCTGATGCAGTTCTATGTCAAGAATGTGACCAGGCCAAGCTGGGAGCAATTTCAGCTTGAGGTCATCCAGCACGAGCCCGGCAAGTTTGATGCGATTGATCACGGGGCGATCATCGACTCTCGACCGATCAGCGTCCTCCCATCCGGCGTGCAAGATCCGCCTGCACGCGTATTGATCTCGCAGCACATCGCGGTCGAGCAAGGCCTGGCGGTCACGATCATGACCATCGCCTGGGACGCGGCACCGGACGCGGTAGCGTACGACGTAGAGTGGCGCTGGGGCTCGCGCGAGTGGGTCAGGGTTCCGCGTACGGGGGAGCTGATGGTGGAAGTGCGTGGGGTATACACCGGCCAGTACCTTGCGCGCGTGCGGGCTGTGAACTCCATGAACGTGTCGTCGATCCCAGCGAACTCGGTGTTGACCAACATCAGCGGCAAGACCGGCGCGCCGCCGGCGGTTGCCTATCTCCGCACGCAATCTCGGGTGTTCGGCATCGGTCTGGAGTGGGGCTTCCCTGCTGGCGCCGAGGATACCCAGCGCACGGAAATATGGTAC

Genome Context

Genome Context

Tertiary structure

PDB ID
7ef10613f761d3305092a8dc754be349c1102ce635cd9bec6586c656c0d07268
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8820
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Prophage identification and molecular analysis in the genomes of 53 Pseudomonas aeruginosa strains isolated from critical care patients Gonzalez de Aledo,M., Blasco,L., Lopez,M., Ortiz-Cartagena,C., Bleriot,I., Pacios,O., Hernandez-Garcia,M., Canton,R. and Tomas,M. 2023 — GenBank