Protein

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Genbank accession
YP_004957459.1 [GenBank]
Protein name
tail protein
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,86
TF
Evidence RBPdetect2
Probability 0,96
Protein sequence
MTIIYDVTGHKGGGAKPHTPQETPDSLHSLAKARILLALGEGEFEGIPTDNELRQRVYLDGTPIQNADRSENFPGARVEFRPGTQHQDVIHGFSAVESEQTVGVKLEYGTPWVRQINDTSLDAVRIRVGIPALYTNEDNGDLVGGRIDYKIVVYTDNADPREFRFAAVGKTMSLYERDHRIELPSNVNTGWRVEVHRLTADSTSAKVVNDIRVQSITEIIDARLRYPLTALLFVEFDAKAFQNIPRVSIKCKGRKVLVPNNYDPINHTYSGDWDGTFKRAWTDNPAWHWYDICITERFGLGRRIKPQMLNRYALYQVAQRCDQLVSDGNGGQEIRFKNDMYIQSQTDAWTVLKDLAAIFAGMTWWGNQMLNIVSDQPVAAVSHTITNASVIDGRFDYASGSQKTRYSTFAVAYGNPKNHYEDAIATGQRVELVRRHKINRLDITAIGCTRESEAQRRGHWALISNQLDQQVSFKVGMEGLFFIPGSVVAIADTNISGGFETRGGRLLSDPGTRTVLNTDSEITFRPGDKFLVRTDSGNVETREIASVNGNKVTLKTALNADPIPDQPFCVDGDDIQLQKFRITDLEYDDATSTFSVRGIEYNDSKYDAVDNGARLDPGIFTQVPDGVMKGPESVIITPSQISSQGQLITNVDIVFPPVKDAVVYEIQWRRTSLQNMEIQWGNDWVNLPRTASNGAHIPNVFSGNYQARVRAIGMGEISSPWVESAITPVEGRLGGLNAPIITNAISGLHQILWKWNHNNAATDISYTELEVRKTGETEWKFLTNVPYPGAEYAQTSLEFGIYQQLRARVADKIGNLSDWSAPFEGQVSNKVDEYMKGLDDEFLTSEDGKRFQEAIDTMPQGIYEAMLTDAQQMFNARAEYQGIYAEIKVAYNVAADAHQAVAQLETLIGTRLDEAEAAIHTLQTAQSTQEQAFARYQQTVAAKFSEQEAAIQQVQTATADVAGALAEYKTQVAAQFGQQSAAIEQKMTSSFNHSGGSATYSLKAGVTYNGTYYDAGMQLSVVTSGNAVKSRIAFKADQFYIMHPSNGTLSSAFIVDGGQVYIDTARIKNASINFAQITDTLRSDNFVAGSRGWNLPKSGNAELNNVTVRGTVYANDGEFRGTVYARDGVFTGTVEATSFVGDVANMCVIGAKAIPNTARNGSRSWSVTFNDSSNSTKLKDFVLLLSYSLVGYTASQSSRIAITANIGGKVVSRTIERAASGNAIHTTIPLAAKGVTAGSVTITVKEEYTNVYGSTLHPSVILMTRGTGSWSQ
Physico‐chemical
properties
protein length:1272 AA
molecular weight: 139929,70270 Da
isoelectric point:5,59434
aromaticity:0,08962
hydropathy:-0,33066

Domains

Domains [InterPro]
DC_0014
STR
1–1268
DC_0014
IPR053171
Unmapped
7–859
IPR053171 IPR015406
IPR055385
ATT
96–222
IPR055385 IPR032876
YP_004957459.1
1 1272
Architecture
STR
ATT
STR
ATT
STR
STR 1-95 | ATT 96-222 | STR 223-343 | ATT 344-495 | STR 496-1268 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_004957459.1
1 1272
Domain Start End Length (AA) Confidence
N-terminal 1 511 511 0,8720
Central domain 512 1080 570 0,0443
C-terminal 1081 1272 191 0,7452
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-511
Central
512-1080
C-terminal
1081-1272

Taxonomy

  Name Taxonomy ID Lineage
Phage Shigella phage EP23
[NCBI] 		1109721 Uroviricota > Caudoviricetes > Dhillonvirus >
Host Shigella sonnei
[NCBI] 		624 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_004957459.1 [NCBI]
Genbank nucleotide accession
NC_016566 [NCBI]
CDS location
range 17858 -> 21676
strand +
CDS
ATGACGATTATCTACGACGTCACGGGCCATAAAGGCGGCGGCGCAAAACCGCACACCCCACAGGAGACGCCTGACAGCCTGCATTCACTGGCTAAAGCCCGCATCTTGCTAGCACTGGGTGAAGGTGAGTTTGAAGGCATCCCGACCGACAACGAATTACGGCAGCGCGTTTATTTGGACGGCACGCCGATCCAGAACGCCGACCGATCCGAAAACTTCCCCGGCGCGCGCGTGGAGTTCCGCCCAGGCACACAGCACCAGGACGTTATTCACGGATTTTCCGCGGTGGAAAGCGAGCAGACAGTGGGTGTAAAACTGGAATACGGCACGCCGTGGGTGCGCCAGATTAACGACACCAGTTTGGACGCCGTGCGCATTCGAGTCGGTATACCGGCCCTGTACACTAACGAAGATAATGGCGACCTGGTGGGCGGGCGCATCGACTATAAAATCGTTGTGTATACGGATAACGCCGATCCGCGCGAGTTCCGCTTCGCTGCCGTTGGAAAAACAATGTCGCTGTACGAGCGCGACCACCGCATCGAGCTACCGTCTAACGTGAATACCGGCTGGCGCGTGGAGGTGCACCGCTTAACGGCTGATTCCACCTCTGCGAAAGTGGTCAATGATATCCGGGTGCAATCCATTACGGAGATTATCGACGCCCGCCTGCGATACCCGCTAACCGCGCTGTTGTTCGTGGAGTTCGACGCTAAGGCTTTCCAGAATATCCCGCGCGTGTCAATCAAGTGCAAAGGTCGCAAGGTGTTGGTCCCGAACAACTACGACCCGATTAATCACACCTATTCGGGGGACTGGGATGGCACGTTTAAACGCGCATGGACGGATAACCCTGCGTGGCACTGGTACGATATTTGTATTACTGAGCGCTTTGGCCTCGGTCGTCGTATCAAACCGCAAATGCTAAACCGATACGCGCTTTACCAGGTTGCGCAGCGCTGCGATCAGCTGGTCAGCGACGGCAACGGCGGGCAGGAAATCCGATTTAAGAATGATATGTACATCCAGTCGCAGACCGACGCCTGGACCGTGCTTAAGGATTTAGCCGCTATCTTTGCCGGTATGACCTGGTGGGGCAATCAGATGTTAAATATCGTCAGTGACCAGCCGGTAGCCGCGGTATCGCACACTATCACAAACGCCTCGGTGATTGATGGTCGATTCGACTACGCATCCGGTAGCCAGAAAACCCGGTATTCCACGTTCGCGGTAGCATACGGCAACCCGAAGAACCACTACGAAGACGCCATCGCAACGGGCCAGCGCGTCGAACTGGTGCGCCGCCATAAGATTAACCGCCTCGATATTACGGCGATCGGCTGTACGCGTGAGTCCGAAGCGCAACGCCGCGGGCACTGGGCGCTAATCTCCAACCAGCTTGACCAGCAAGTTAGCTTTAAGGTTGGCATGGAAGGGCTGTTTTTTATCCCGGGAAGCGTAGTTGCGATCGCGGATACTAATATTTCCGGCGGCTTCGAGACACGCGGCGGACGCCTGTTGTCAGATCCAGGGACGCGTACTGTGCTGAACACGGACAGCGAAATCACGTTCCGCCCTGGCGATAAATTCTTGGTGCGCACCGATAGCGGGAATGTGGAGACTCGCGAGATTGCCAGCGTCAACGGCAACAAGGTTACGCTGAAAACAGCACTGAACGCTGACCCGATTCCCGATCAACCGTTTTGCGTTGATGGCGACGATATCCAGTTGCAGAAGTTCCGCATCACCGACCTGGAATATGACGACGCTACCAGCACTTTCTCGGTGCGCGGGATTGAATACAACGACAGCAAATACGATGCCGTTGATAATGGCGCTCGCCTTGATCCGGGCATCTTCACGCAAGTTCCTGACGGCGTAATGAAGGGGCCGGAGTCGGTAATCATCACCCCGTCGCAGATCTCATCGCAAGGCCAGCTAATCACCAACGTGGATATTGTTTTCCCGCCGGTGAAAGATGCCGTTGTGTACGAAATCCAGTGGCGGCGCACCAGCTTGCAGAATATGGAAATCCAGTGGGGTAACGACTGGGTGAACCTTCCACGCACGGCATCGAACGGCGCGCACATCCCTAACGTGTTCTCCGGCAACTACCAGGCACGCGTCCGCGCGATCGGTATGGGTGAGATTTCATCCCCGTGGGTGGAGTCCGCCATCACGCCGGTGGAAGGTCGCCTCGGCGGGCTTAACGCGCCGATCATCACCAACGCGATTTCTGGCCTCCACCAGATTTTGTGGAAGTGGAACCATAATAACGCCGCGACGGATATCTCATACACCGAGCTTGAAGTGCGCAAGACCGGTGAGACGGAATGGAAATTTCTTACCAACGTCCCATATCCAGGGGCGGAGTATGCACAAACGTCTCTGGAGTTCGGTATCTATCAGCAGTTGCGCGCCCGCGTAGCGGATAAAATCGGCAACCTGTCGGACTGGTCGGCCCCGTTTGAAGGGCAGGTAAGTAACAAAGTTGACGAGTACATGAAGGGGCTTGACGATGAGTTCTTGACTTCTGAGGATGGTAAACGCTTCCAGGAAGCGATCGACACCATGCCGCAAGGCATTTACGAGGCCATGCTCACCGACGCGCAGCAAATGTTCAACGCCCGCGCTGAGTACCAGGGGATTTATGCGGAAATCAAGGTGGCGTATAACGTGGCAGCAGACGCCCACCAGGCCGTCGCGCAACTGGAGACGTTGATCGGCACGCGCCTTGACGAAGCTGAAGCGGCGATTCACACGTTGCAGACGGCGCAGAGTACGCAAGAGCAGGCCTTCGCCCGGTATCAGCAGACTGTTGCCGCTAAGTTCTCGGAGCAGGAAGCCGCTATCCAGCAGGTACAGACGGCAACGGCGGACGTAGCTGGCGCACTGGCGGAGTATAAGACCCAGGTCGCAGCACAGTTTGGGCAGCAGTCTGCCGCTATTGAGCAGAAGATGACGTCTTCGTTTAACCACTCCGGTGGTAGCGCCACGTACAGCCTTAAGGCGGGCGTGACGTATAACGGGACTTACTACGATGCCGGTATGCAGCTTTCCGTCGTGACGTCGGGCAACGCGGTTAAATCACGCATCGCATTCAAGGCGGACCAGTTCTACATCATGCACCCGTCCAACGGCACGCTGTCATCGGCGTTTATTGTGGATGGGGGACAGGTGTATATAGACACAGCCCGCATCAAGAACGCGTCCATAAACTTCGCGCAGATCACGGACACGCTGCGGTCAGATAACTTCGTAGCGGGATCACGCGGGTGGAACCTGCCTAAATCTGGTAATGCGGAGCTTAACAATGTGACAGTCCGCGGCACCGTTTATGCGAATGATGGTGAGTTCCGGGGCACGGTTTATGCAAGGGATGGGGTATTTACCGGAACGGTCGAAGCCACCAGTTTTGTCGGTGACGTTGCAAATATGTGTGTTATCGGTGCGAAAGCAATACCCAACACAGCCAGGAATGGATCAAGGTCGTGGTCGGTGACTTTCAACGACTCATCCAATTCAACAAAACTCAAAGACTTTGTATTGCTGTTAAGCTACTCACTGGTCGGGTACACCGCAAGCCAGTCAAGCCGCATTGCTATTACCGCCAATATTGGCGGGAAAGTAGTCTCAAGGACTATTGAACGAGCGGCAAGCGGAAACGCAATCCATACAACGATTCCTTTAGCTGCGAAAGGTGTAACGGCGGGAAGTGTGACAATTACTGTGAAAGAAGAGTATACAAACGTCTACGGCAGCACATTGCACCCGTCTGTAATTTTAATGACTCGTGGGACAGGTAGCTGGTCGCAATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
1fe09112ad86faba89d41b4b89b1738f9bf64182c11e220b73df7a5cd8b6ac8f
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7562
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Comparative genomic analysis of bacteriophage EP23 infecting Shigella sonnei and Escherichia coli Chang,H.W. and Kim,K.H. 2011 22203555 GenBank