Protein

View in Explore
Genbank accession
YP_009834314.1 [GenBank]
Protein name
tail fiber protein proximal subunit
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,62
TF
Evidence RBPdetect2
Probability 0,96
Protein sequence
MSSIPFRVTDGLDAAGQKIVNVGYPDINSKMDGVSVDFFVQENTIQLYDATRTYDKNFAVIYDNRIYLSQVDITSPEAFNPVKWKPVRTDPSWKLVTTNAPALTNLSAGDHILAQTISSDVTFTLPTNALNGDVIVIRDNGSNLHDYTIDVSGNGRTISGLASYKITAKNSSNYFILNGSEWFVQTEYAGDVNKSFISNKSYPAGGYYKSIVGDQLMRETRYTGGIKIQLPKYARNGDTITTYDLDGNNPVTKTTVNVHPGSSHNIIVEYGSTPMKTVVFDSTDWGMFVFDSSLNAWRVFDADNLSRWKSVKTSTYLGQPNDRLVVYTETPSTVNITFPRDAARGDSFFIDTRYMKRGSTLTLNIDASSTNDFFVPDGNTLMNPRISAYRDFLANMESNTVKTQSFDIQNRGEQWEFVYFTNALGSGKDVWSVVTMSEIPYRVDRNVPEFYGMAAIASQSSVNKNKEEITTGQNPDCEDFVTAETLANKTASTVRRGITRYASNGESKAVSGNLSDEAWSGVAISPFLLNDRLSTTTMRGLLKVATQSQANAQSGSGENWAQVAVTPSTLNGRVATESMTGLSALVSANGTKPTTRTTPGTGVYDYNDHSKVITPKTLFEKNATEFSQGMVYIANQGEVNTGTADTATGALVVTATTLEGRQATASLTGLSRAATSTEVLSNTPPAGDNVHVSAKGLVSRTATETRWGLSETATQAEVDAGTLHDKWFVTPKTFGNWLARERLTVFDTSGLRTVGNIWEGQSFNIVIPTESQRGTARIATQNEVNDMTGTANDEIIVTPKKLSARLATTTQTGLSQIATQSEVDTGTNNTKYLTPLTALTSSRNSAGYRMTDTRYGVGITAILSNNNSANSVFEGNDILGSTRALTGYAHGDVLVSPRGLNTALANFLPLKAVAVSASAMEVGGNRIPSTDWVRRTIAQTITGEMTFTANPSIEKIRPYFYLNETSTTSHVSMIQWKRQGSNAFLDLGVNTIDGPLILNAMDENSRYYRIFTVERDGNAIFTNQVQNGGQNPTSGNHLVRFAYAEERYVRGPGNFAETITGNKTFVNTTYFKNSGVQNIWMGNTSKSGITINANESLNIGSLGGLQIRPNGLSSPSNTSSFESNGDLKVNAQVKIGSALPIDPDDAIRKDYLDSVIDDMNTTSGSRVFKGGDTMTGELIINSVKALTVNGDSNLNGTTTVNKLRIAVGNGEFLEIRANPTTKSVDFVWIS
Physico‐chemical
properties
protein length:1230 AA
molecular weight: 133458,68000 Da
isoelectric point:5,61140
aromaticity:0,08374
hydropathy:-0,34602

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009834314.1
1 1230
Domain Start End Length (AA) Confidence
N-terminal 1 833 833 0,6824
Central domain 834 1033 201 0,1988
C-terminal 1034 1230 196 0,7827
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-833
Central
834-1033
C-terminal
1034-1230

Taxonomy

  Name Taxonomy ID Lineage
Phage Aeromonas phage AS-zj
[NCBI] 		2024208 Uroviricota > Caudoviricetes > Pantevenvirales > Emmerichvirinae > Ceceduovirus
Host Aeromonas salmonicida subsp. salmonicida
[NCBI] 		29491 Bacteria > Proteobacteria > Gammaproteobacteria > Aeromonadales > Aeromonadaceae > Aeromonas

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009834314.1 [NCBI]
Genbank nucleotide accession
NC_048673 [NCBI]
CDS location
range 9025 -> 12717
strand +
CDS
ATGTCTTCAATTCCGTTTCGCGTTACCGACGGCTTAGATGCCGCAGGTCAAAAAATAGTTAACGTCGGATATCCCGATATTAACTCAAAGATGGATGGTGTGAGTGTCGATTTCTTTGTACAAGAAAACACAATCCAACTATATGACGCAACTAGAACATACGACAAAAACTTTGCTGTTATCTATGATAACCGCATATACCTAAGTCAAGTTGATATAACCTCACCAGAGGCATTCAACCCGGTAAAATGGAAACCAGTACGTACAGACCCAAGTTGGAAGCTGGTTACGACTAATGCACCAGCGTTGACGAATCTTTCTGCTGGCGATCACATATTGGCACAGACCATAAGTAGCGACGTAACATTTACCTTACCAACTAATGCTCTTAATGGGGACGTTATTGTTATCAGAGATAATGGTTCTAATCTTCACGATTATACCATAGATGTTTCTGGTAATGGAAGAACTATTTCCGGTTTGGCTTCTTATAAGATCACAGCCAAAAATTCATCCAACTACTTCATTTTGAATGGTAGCGAATGGTTTGTTCAAACTGAATACGCTGGTGATGTAAACAAATCATTTATCAGCAACAAGTCGTATCCAGCCGGTGGATATTATAAATCCATTGTTGGTGACCAGTTGATGAGAGAAACCAGATATACTGGTGGAATTAAGATCCAACTACCAAAATACGCCAGAAACGGTGATACTATTACCACATATGATCTTGATGGTAATAACCCCGTAACAAAGACAACCGTAAACGTTCATCCGGGTAGTAGCCACAACATTATAGTTGAATACGGATCGACCCCAATGAAAACTGTCGTTTTTGATTCTACTGATTGGGGTATGTTTGTTTTTGATTCAAGTCTAAACGCTTGGAGAGTTTTCGACGCCGACAACCTTAGTCGTTGGAAAAGTGTCAAAACATCCACATACTTAGGTCAACCAAACGACCGACTAGTAGTTTATACTGAAACTCCGTCGACTGTCAACATTACATTCCCTCGTGATGCGGCAAGAGGTGATAGCTTCTTTATAGACACACGATACATGAAAAGGGGTTCCACTTTAACTTTAAATATTGATGCATCCAGTACAAATGATTTCTTTGTACCAGATGGTAACACTCTAATGAACCCCCGGATCAGCGCATACCGCGATTTTCTTGCTAATATGGAATCAAATACCGTAAAAACTCAGTCATTTGATATCCAAAACCGTGGGGAACAGTGGGAATTTGTGTACTTCACAAATGCTCTTGGTTCTGGTAAAGACGTATGGTCTGTTGTTACTATGTCTGAGATTCCGTATCGAGTAGACCGAAATGTACCAGAATTTTATGGTATGGCTGCCATTGCGTCTCAATCATCTGTAAACAAGAACAAAGAAGAGATCACAACCGGTCAAAACCCAGATTGTGAGGATTTTGTTACCGCTGAAACATTGGCTAACAAAACAGCAAGTACCGTCCGGCGTGGTATCACCCGATATGCATCTAACGGTGAATCCAAGGCAGTTAGTGGAAACCTATCCGATGAAGCATGGTCCGGGGTGGCAATAAGTCCGTTCCTGTTGAACGACCGTCTATCTACAACAACAATGCGTGGGTTGTTGAAGGTAGCGACACAGAGTCAAGCAAACGCACAATCCGGTTCCGGTGAAAACTGGGCTCAAGTTGCAGTCACACCATCTACCCTTAACGGTAGAGTCGCCACCGAGTCTATGACTGGTTTATCGGCTCTTGTCTCAGCTAATGGAACTAAGCCTACCACAAGAACAACTCCGGGTACAGGTGTTTATGATTATAACGATCATAGCAAGGTAATCACTCCGAAAACTCTATTTGAGAAAAACGCAACTGAGTTTTCACAAGGTATGGTGTACATTGCCAACCAAGGGGAGGTTAACACAGGTACTGCTGACACCGCAACCGGTGCGCTAGTAGTAACCGCAACTACCCTAGAAGGACGTCAGGCTACAGCATCACTAACCGGGTTGTCAAGGGCGGCAACATCAACAGAAGTACTAAGCAACACACCACCGGCTGGTGACAACGTACACGTTAGCGCAAAAGGACTTGTAAGTAGAACCGCAACCGAAACCCGTTGGGGTTTGTCCGAAACCGCAACACAAGCGGAAGTAGATGCGGGAACATTACATGACAAATGGTTTGTTACTCCAAAAACATTTGGTAACTGGTTAGCTAGAGAAAGACTGACTGTGTTCGATACATCGGGACTTAGAACCGTTGGTAATATTTGGGAAGGTCAATCTTTTAATATCGTTATTCCTACTGAGTCACAACGAGGCACTGCTAGAATTGCAACTCAGAATGAAGTAAACGATATGACCGGAACCGCAAATGACGAAATTATCGTAACTCCAAAGAAACTGAGTGCAAGACTAGCGACTACGACCCAAACGGGTTTGTCTCAAATTGCAACTCAATCTGAGGTTGATACCGGTACTAACAACACAAAATACCTAACCCCGTTAACCGCTCTAACCAGCTCTAGAAATAGTGCGGGTTATAGAATGACTGATACTAGATATGGTGTTGGTATTACTGCAATATTGTCAAACAACAACTCTGCTAACTCCGTGTTTGAAGGCAATGATATTCTTGGTTCTACAAGAGCATTAACAGGCTACGCACATGGAGATGTATTGGTTTCCCCGAGAGGTTTGAATACAGCATTAGCTAATTTCCTACCACTTAAAGCTGTGGCTGTAAGTGCCAGTGCAATGGAGGTTGGTGGAAACCGTATACCTTCAACTGATTGGGTTCGTCGTACTATTGCACAAACAATAACCGGAGAAATGACGTTTACTGCAAATCCGTCTATTGAGAAGATTAGACCTTATTTCTATCTCAACGAAACATCGACTACATCTCATGTTTCCATGATCCAGTGGAAACGTCAGGGTAGCAATGCGTTTTTAGATCTTGGTGTAAACACGATTGATGGCCCATTAATCCTTAACGCAATGGACGAAAACAGTAGATACTATAGGATCTTTACTGTTGAACGGGATGGTAATGCAATATTCACCAACCAAGTTCAAAACGGCGGACAGAACCCAACGTCTGGGAACCACCTTGTTCGTTTTGCTTATGCAGAAGAAAGATATGTTCGTGGACCGGGTAACTTCGCAGAAACTATTACCGGTAACAAGACTTTTGTTAATACTACATATTTTAAGAACAGCGGTGTCCAAAATATATGGATGGGTAATACTTCTAAGAGTGGGATAACCATAAACGCAAACGAGAGTTTGAATATTGGTTCTCTTGGTGGATTACAAATTCGTCCGAACGGTCTATCTTCGCCATCAAATACATCATCATTTGAATCAAATGGCGATCTAAAGGTAAATGCTCAAGTTAAGATAGGAAGTGCATTACCGATTGATCCTGATGATGCAATTCGTAAAGACTATCTGGATTCCGTGATAGACGATATGAATACTACATCTGGTTCTCGTGTGTTTAAGGGTGGCGATACCATGACGGGTGAGCTTATCATCAATTCGGTGAAAGCACTAACCGTAAATGGTGATTCTAACCTGAATGGAACAACAACCGTAAATAAACTTAGGATAGCAGTTGGTAACGGAGAATTCTTAGAAATAAGAGCAAACCCAACTACCAAGTCTGTTGACTTTGTTTGGATCAGTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
dac31c8d32d48fb4edb3a07640057ec1c3fd7bb921851f0c88a9a838c44822b3
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5553
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
In vitro design and evaluation of phage cocktails against multidrug-resistant Aeromonas salmonicida Chen,L., Yuan,S. and Ma,Y. 2018-07-06 — GenBank