Protein

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Genbank accession
YP_010100690.1 [GenBank]
Protein name
long tail fiber protein proximal connector
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
Protein sequence
MERFMAEFGQGYVQVPTLSENNAVRYKLSIAGSCTKSTTKAYVKFQDGNFGSQNFQNGLNLIEIDVSTEPKIVANKTYSFTKDFDVISEAFITYINSIPANRIVCLISSGRLNASQKLIDWFRAAGSTAFPTKWLIDRFEPSYSAFYVSGRNAIVMEHVLYNDGVLVEDVSTPLEVVFDDISDVGGTGYPVRIVEDENTYLSNEGDEIKRFPTESPTTPLTDYNMKPGEFFYLKFQLMCDQALKDVGTSQMSVRFFNASGALTGTVNMEVPSNVPAGAWMTFERVVMVPEGTTDFTIYARKTASAGQGGVRNVMFGEISESEPQPKPAEFGVNGIRMNFGTETKNMGTTIAQLYDKTGTKPGQVWVAEFREKY
Physico‐chemical
properties
protein length:373 AA
molecular weight: 41416,22210 Da
isoelectric point:4,89966
aromaticity:0,11796
hydropathy:-0,24718

Domains

Domains [InterPro]
DC_0912
STR
1–373
DC_0912
PS52031
LEC
22–193
PS52031
IPR039477
STR
57–130
IPR039477
YP_010100690.1
1 373
Architecture
STR
STR 1-373
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_010100690.1
1 373
Domain Start End Length (AA) Confidence
N-terminal 1 173 173 0,4485
Central domain 174 362 190 0,4033
C-terminal 363 373 10 0,5070
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-173
Central
174-362
C-terminal
363-373

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage vB_EcoM_005
[NCBI] 		2500761 Uroviricota > Caudoviricetes > Pantevenvirales > Tevenvirinae > Dhakavirus
Host Escherichia coli O157
[NCBI] 		1045010 Bacteria > Proteobacteria > Gammaproteobacteria > Enterobacteriales > Enterobacteriaceae > Escherichia

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010100690.1 [NCBI]
Genbank nucleotide accession
NC_055783 [NCBI]
CDS location
range 153149 -> 154270
strand -
CDS
ATGGAAAGATTTATGGCAGAATTTGGACAAGGATATGTCCAGGTTCCTACATTATCTGAAAACAATGCTGTAAGGTATAAACTTAGTATAGCGGGTAGTTGTACTAAGTCTACCACAAAAGCATATGTTAAATTTCAAGATGGGAACTTCGGTTCCCAGAATTTTCAAAATGGATTAAACCTTATAGAAATCGATGTTAGCACCGAACCTAAAATAGTTGCTAACAAAACTTATAGTTTTACAAAAGATTTTGATGTTATATCTGAAGCTTTTATAACGTATATAAATTCTATACCAGCCAATAGAATAGTTTGTTTAATATCCTCAGGTAGATTAAATGCTTCACAAAAACTTATTGATTGGTTCCGTGCAGCAGGAAGCACTGCATTCCCGACTAAATGGCTAATAGACCGTTTTGAGCCGTCTTATTCAGCATTTTATGTTTCAGGAAGGAATGCTATAGTAATGGAACATGTGCTTTATAATGATGGGGTGCTTGTCGAAGATGTTTCTACTCCATTAGAAGTGGTATTTGACGATATCAGTGATGTTGGCGGTACAGGATATCCTGTCAGAATTGTTGAAGATGAAAACACTTATCTAAGCAATGAGGGAGATGAAATTAAGCGATTTCCTACAGAATCTCCTACTACCCCATTAACAGATTATAATATGAAACCAGGCGAATTCTTTTACCTTAAGTTTCAATTAATGTGTGACCAAGCTTTAAAAGACGTCGGGACCTCTCAGATGTCTGTTAGATTTTTTAATGCCTCAGGTGCTTTAACCGGGACAGTTAATATGGAAGTTCCTTCCAACGTTCCTGCTGGTGCATGGATGACATTTGAACGGGTAGTAATGGTCCCTGAAGGTACTACAGACTTTACCATTTATGCCAGAAAAACAGCTTCGGCTGGCCAAGGCGGAGTTCGAAATGTTATGTTCGGTGAGATATCTGAATCAGAACCTCAGCCAAAACCTGCTGAATTTGGTGTTAATGGTATTCGTATGAACTTTGGTACGGAAACTAAAAATATGGGTACTACCATAGCCCAGCTATATGATAAAACAGGCACTAAACCTGGCCAGGTTTGGGTCGCTGAATTTAGAGAAAAATATTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
b1642beaec50f03f45337095bc2bda1a8a5f63d1fd0b899955c5e69fb9e5468f
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6764
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Characterization of novel bacteriophages infecting Shigella spp. and E. coli O157: H7 Shahin,K., Bao,H. and Wang,R. 2020-06-17 — GenBank