Protein

View in Explore
Genbank accession
YP_009032171.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TF
Evidence RBPdetect
Probability 0,88
Protein sequence
MAIDKSYYTIITDVGKAKIANASVTGNKVGFVKIQLGDGGGSEYTPTESQTALKNVVWEGNIGNTTTDETAPNCIILESLIPSSVGGFMIREIGYLDDENNLIAISKYKECYKPSIEQGAVVDMKVKTVLIVSNVNNIELKIDPTIIFATLKDIQDLETKIGTVNTKIDTTKTELKSNIETAKTEIDEKIGDTTQLTTTDKTNIVGALNEVKTSVDSIETTAEKTSYNNATSKLTATTVQGAIDEVVAKIENFNEVNISIQNDMLPI
Physico‐chemical
properties
protein length:267 AA
molecular weight: 28881,30350 Da
isoelectric point:4,57448
aromaticity:0,04494
hydropathy:-0,19101

Domains

Domains [InterPro]
DC_1371
STR
1–263
DC_1371
IPR051934
Unmapped
4–262
IPR051934
IPR022225
ATT
5–151
IPR022225 Coil
YP_009032171.1
1 267
Architecture
ATT
STR
ATT 1-151 | STR 152-263 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Clostridium phage CDMH1
[NCBI] 		1411095 Uroviricota > Caudoviricetes > Yongloolinvirus >
Host Clostridioides difficile
[NCBI] 		1496 cellular organisms > Bacteria > Bacillati > Bacillota > Clostridia > Peptostreptococcales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009032171.1 [NCBI]
Genbank nucleotide accession
NC_024144.1 [NCBI]
CDS location
range 21814 -> 22617
strand +
CDS
TTGGCTATAGATAAAAGTTATTACACTATAATTACAGATGTAGGGAAAGCAAAGATAGCAAATGCAAGTGTCACAGGTAATAAAGTGGGATTTGTAAAAATTCAACTTGGTGATGGAGGAGGGAGTGAATATACTCCAACTGAGAGTCAGACAGCTCTCAAAAATGTGGTATGGGAAGGCAATATTGGAAATACAACTACAGATGAAACTGCACCAAATTGTATAATATTAGAGAGTTTAATACCATCAAGTGTAGGCGGGTTTATGATAAGAGAAATAGGATATTTAGATGATGAAAATAATTTAATTGCCATTTCTAAATACAAAGAGTGTTATAAACCTTCTATAGAACAAGGTGCAGTGGTAGACATGAAGGTTAAAACTGTGCTTATTGTATCTAATGTAAATAATATAGAACTTAAAATTGACCCAACAATAATCTTTGCAACACTCAAAGATATACAAGACTTAGAAACTAAAATAGGTACTGTTAATACTAAAATTGATACAACTAAAACAGAATTAAAAAGCAACATAGAAACTGCTAAAACAGAAATTGACGAGAAAATAGGGGATACAACACAACTTACTACAACAGATAAAACAAATATAGTTGGTGCATTAAATGAGGTAAAAACTAGTGTAGATAGTATAGAAACAACAGCAGAGAAAACAAGTTATAATAATGCTACAAGTAAACTTACTGCTACTACTGTGCAAGGGGCAATAGATGAAGTTGTTGCAAAGATAGAAAATTTCAACGAGGTTAATATATCTATACAAAATGATATGTTACCTATATAG

Genome Context

Genome Context

Tertiary structure

PDB ID
d518db99156fb7f466879072280b740702641bce62d257377baf8f498fed7413
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8872
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
What does the talking?: Quorum sensing signalling genes discovered in a bacteriophage genome Hargreaves,K.R., Kropinski,A.M. and Clokie,M.R.J. 2014 24475037 GenBank