Protein

View in Explore
Genbank accession
QXO06130.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TF
Evidence RBPdetect
Probability 0,88
TF
Evidence RBPdetect2
Probability 0,72
Protein sequence
MSDFRYQGYNFNLTSFREFVQEFNIMDNQRASADALNKSVNKLKREVNQLIGQFKILTSKESIRWDASIIYEAGEIVSYITEDNPDVETIKNSYYLALPSDIENQGYYPDTNPDMWKKVTLNELYPWLDVDNYPTKTDNDKDWPINDDYDVINLKYLKWALEQFKDFLDGYLAGIYIKQDNKIDLEVSEPAHVTTKKYVDNLIDEVKQSITNIDDLLTDYVFVDSKSKQLQTRKSKKEAWLTTEAGLLPGLNLISTIGSTTQQFKAMYAQDFIGTALKAKYADLAEVYETDKEFEVGAVLGINENSEIEYFDIYKHNRPLGVVSDKPGFILNKDCKGVLIALKGQTPVIVKGSVKAGDELYAEYDGYACVNPSKKEEKYFIGIALESKESELVGLVNTKV
Physico‐chemical
properties
protein length:400 AA
molecular weight: 45663,87560 Da
isoelectric point:4,70572
aromaticity:0,11500
hydropathy:-0,46300

Domains

Domains [InterPro]
DC_1011
STR
1–280
DC_1011 G3DSA:2.40.300.10
Coil
Unmapped
26–60
Coil G3DSA:2.40.300.10
QXO06130.1
1 400
Architecture
STR
RBD
STR 1-280 | RBD 281-385 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Campylobacter phage CJLB-12
[NCBI] 		2780170 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Campylobacter jejuni
[NCBI] 		197 cellular organisms > Bacteria > Pseudomonadati > Campylobacterota > Epsilonproteobacteria > Campylobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QXO06130.1 [NCBI]
Genbank nucleotide accession
MW074125.1 [NCBI]
CDS location
range 27422 -> 28624
strand -
CDS
ATGTCTGATTTTAGATACCAAGGCTATAATTTTAACTTAACTAGTTTTAGAGAGTTCGTTCAAGAATTCAATATTATGGATAACCAAAGAGCTAGTGCAGACGCACTAAACAAGTCGGTTAATAAACTCAAAAGAGAGGTTAATCAATTAATCGGCCAATTTAAAATATTAACTTCAAAAGAATCTATCAGATGGGATGCTAGCATAATTTATGAAGCAGGTGAAATAGTTTCTTATATAACAGAAGATAATCCAGATGTAGAAACCATTAAAAATTCATATTATTTAGCATTGCCTAGTGATATCGAAAATCAAGGGTATTATCCAGATACTAATCCTGATATGTGGAAAAAAGTTACTTTAAATGAATTATACCCTTGGTTAGATGTAGATAATTATCCTACTAAAACTGATAATGATAAAGATTGGCCCATCAACGACGATTACGATGTTATTAACTTAAAGTATCTTAAATGGGCTTTAGAACAATTTAAAGATTTCTTAGATGGTTATCTCGCAGGTATCTATATTAAACAAGATAATAAAATAGATTTAGAAGTATCTGAACCCGCTCACGTAACAACTAAAAAATATGTAGATAATTTAATAGATGAAGTAAAACAAAGCATTACTAATATAGATGATTTGTTAACGGATTATGTATTTGTTGATTCTAAATCTAAACAATTACAAACTCGTAAAAGTAAAAAAGAAGCTTGGTTAACCACAGAAGCTGGATTATTACCAGGATTAAACTTAATATCTACAATTGGCTCAACAACACAACAATTTAAAGCTATGTACGCTCAAGATTTTATAGGAACTGCTTTAAAAGCAAAATACGCTGACTTAGCTGAGGTCTACGAAACCGATAAAGAGTTTGAAGTTGGTGCTGTTCTGGGTATTAATGAAAATTCAGAAATTGAATATTTCGACATCTATAAACATAATAGACCTTTAGGTGTAGTTTCAGATAAACCAGGGTTTATTCTTAATAAAGATTGTAAAGGTGTGTTAATAGCTTTAAAGGGTCAAACACCAGTAATTGTTAAAGGTTCTGTAAAAGCCGGCGACGAATTATATGCTGAGTATGACGGTTATGCCTGTGTAAACCCAAGCAAAAAAGAAGAAAAATATTTTATAGGCATAGCTTTAGAATCTAAAGAATCTGAACTAGTTGGCTTAGTAAACACTAAAGTATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
bd32d782ed4b946bebff42ddbbbcc51d549f2ad65c39abf925ea1a64c00d25a6
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7084
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Bacteriophages are an effective tool to reduce Campylobacter contamination in foods Vikram,A., Woolston,J. and Sulakvelidze,A. 2017-11-23 — GenBank