Protein

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Genbank accession

YP_010678531.1 [GenBank]

Protein name

tail fiber protein

RBP type

Evidence GenBank

Probability 1,00

Evidence RBPdetect

Probability 0,80

Evidence RBPdetect2

Probability 0,96

Protein sequence

MANKISTVRTYPLNGAVNFTITFEYLARKFVQVTLIGKDRKELVLNQDYRFTTKTQITTSRTWTAADGYQMIEIRRFTSASDRLVDFADGSILRAYDLNISQIQTLHVAEEARDLTADTIGVNNDGHLDARGRRIVNVADAKDDFDAVNLNQMKRWDGSALNSANMAAASEQNALTYRNDAERFKNEANSFRDSAETSKNLAQTADQQAYGHRVVAEEAARNSENSFQAALSSRNDAERFKNEANGFRDAAESAAGTAQKYGDKVLEGMATLGSLPIGTVVMVLRGNPPIGFLECGVPFDTNAYPALAKLFPEGVTPTFHNRFPRGYAKNPQAHETGKGQFGEQNMPAHNHELRATGRTADAGGGRFWGSGAGAHKHDVSISYKNNSGIYQHAGYVRLGSKGAYDGVDTYGTSWVDEHNHCTDIPNHAHDVTVTGNTLGNGGQIGAGHNHITPYNVGVMFCIKAYEGIAELDQATVVVGTIVGRVENLEARALAAENRVATLERYRKAVKVLEVPDVEYGTDRTETIMYSNMSRILSNLGEHLPTGYTKCTVAITLTMNNPGIGIYEQRVTAIAELCSGTNESRIVWLPTSSMGHAINATNIELGVQYRPLSTDGDPYFVFRINKGEALLSRGSYSMWATVIHYF

Physico‐chemical properties

protein length:	645 AA
molecular weight:	70657,86080 Da
isoelectric point:	6,19098
aromaticity:	0,08527
hydropathy:	-0,41628

Domains

Domains [InterPro]

IPR005604
ATT
1–130

IPR005604 IPR008635 SSF88874 Coil

DC_0657
STR
1–622

DC_0657

IPR011049
STR
95–190

IPR011049 IPR037053

IPR011049
STR
115–155

IPR011049 Coil

YP_010678531.1

1 645

Architecture

ATT

STR

ATT

STR

ATT 1-130 | STR 131-272 | ATT 273-325 | STR 326-622 |

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Domains [InterPro]

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
IPR005604	ATT	DC_0240	1	130	InterPro cluster	Bacteriophage T7 tail fibre protein-like, N-terminal domain	Central	Medium	Text match	1326 proteins / 1328 hits
DC_0657	STR	DC_0657	1	622	Novel HMM	DC_0657	Central	Low	Positional only	143 proteins / 143 hits
IPR011049	STR	IPR011049	95	190	Merged direct domain	Serralysin-like metalloprotease, C-terminal	Central	Low	Positional only	81 proteins / 81 hits
IPR011049	STR	IPR011049	115	155	Merged direct domain	Serralysin-like metalloprotease, C-terminal	Central	Low	Positional only	81 proteins / 81 hits
IPR008635	RBD	DC_0221	134	174	InterPro cluster	Trimeric autotransporter adhesin YadA-like, stalk domain	C-terminal	Medium	Text match	14 proteins / 17 hits
Coil	Unmapped	-	167	187	Coils	Coil	-	-	-	-
SSF88874	STR	SSF88874	270	464	Merged direct domain	SSF88874	Central	Low	Positional only	109 proteins / 109 hits
IPR037053	ATT	IPR037053	273	325	Merged direct domain	Phage tail collar domain superfamily	N-terminal	Low	Positional only	37 proteins / 37 hits
Coil	Unmapped	-	485	505	Coils	Coil	-	-	-	-

Taxonomy

	Name	Taxonomy ID	Lineage
Phage	Salmonella phage vB_STy-RN5i1 [NCBI]	2910951	Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host	Salmonella typhimurium [NCBI]	90371	cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Genbank protein accession

YP_010678531.1 [NCBI]

Genbank nucleotide accession

NC_071037.1 [NCBI]

CDS location

range 3768 -> 5705
strand -

CDS

ATGGCTAACAAAATTTCCACTGTACGTACTTACCCACTGAACGGTGCCGTGAACTTCACGATTACCTTTGAGTATTTAGCACGTAAGTTCGTCCAAGTGACACTCATCGGGAAAGACCGTAAAGAGTTGGTTCTTAATCAGGACTATCGCTTTACCACTAAGACCCAAATCACAACCTCCCGTACATGGACTGCCGCCGATGGTTATCAGATGATTGAGATTCGTCGATTCACCTCTGCATCCGACCGTCTGGTTGACTTTGCTGATGGCTCAATCCTTCGCGCATATGACCTTAACATCTCACAGATTCAGACGCTGCACGTAGCTGAAGAGGCACGAGACCTTACTGCGGATACCATCGGTGTCAACAATGATGGTCATTTAGATGCTCGCGGTCGTCGCATTGTGAACGTGGCGGATGCTAAGGACGACTTTGATGCTGTGAACCTCAACCAGATGAAACGATGGGATGGCTCCGCACTTAATTCCGCAAACATGGCGGCTGCTAGTGAACAGAATGCCCTAACCTACCGTAATGATGCTGAACGTTTCAAGAATGAAGCTAACAGTTTCCGCGACTCTGCCGAGACCTCAAAGAACTTAGCGCAAACGGCAGACCAACAGGCTTATGGTCATCGTGTAGTGGCTGAAGAGGCTGCACGTAACTCCGAGAACTCTTTCCAAGCCGCACTATCTTCACGCAATGACGCTGAACGTTTCAAGAATGAAGCCAATGGTTTCCGTGATGCCGCTGAGAGTGCTGCTGGTACTGCACAGAAATATGGTGACAAGGTGCTTGAGGGCATGGCTACTCTTGGTAGTTTACCGATTGGTACTGTGGTTATGGTACTGCGTGGTAACCCACCTATTGGATTCCTTGAGTGTGGCGTTCCGTTTGACACTAACGCATACCCAGCACTGGCTAAGTTGTTCCCTGAAGGCGTGACTCCAACGTTTCACAATAGGTTCCCACGAGGTTACGCTAAGAACCCTCAAGCCCATGAGACTGGTAAGGGTCAATTTGGTGAACAGAACATGCCAGCACACAACCATGAGTTAAGAGCTACAGGTAGAACTGCGGACGCTGGTGGTGGTCGATTTTGGGGCAGTGGCGCTGGCGCGCACAAACATGATGTATCAATCTCCTACAAGAACAATAGTGGTATCTATCAACACGCTGGCTATGTTCGCTTAGGTAGTAAAGGCGCATACGATGGTGTAGATACCTATGGTACTTCTTGGGTTGATGAGCACAACCACTGTACTGACATCCCTAATCACGCACATGACGTGACCGTAACAGGGAACACCTTAGGAAATGGAGGTCAGATTGGTGCTGGTCATAACCACATCACTCCATATAACGTTGGTGTAATGTTCTGTATCAAAGCCTATGAGGGAATCGCTGAGTTAGACCAAGCGACAGTAGTAGTTGGTACAATCGTAGGGCGCGTTGAGAACCTTGAGGCTCGTGCGCTTGCCGCTGAGAACCGTGTGGCTACCCTTGAGAGATACCGTAAGGCGGTTAAGGTTCTTGAGGTTCCTGATGTAGAATATGGAACAGACAGGACTGAAACTATTATGTACTCTAATATGAGCCGTATCCTTAGTAACTTGGGTGAACATCTTCCAACAGGGTATACTAAATGCACAGTGGCTATTACACTGACTATGAACAATCCGGGCATTGGAATTTATGAACAACGCGTCACAGCCATAGCTGAATTATGCAGCGGGACAAACGAATCGCGGATTGTATGGCTCCCAACGTCCTCTATGGGCCACGCAATCAATGCCACCAATATAGAACTTGGCGTGCAGTACAGACCTTTAAGTACAGATGGGGACCCATATTTTGTGTTCCGCATCAACAAAGGTGAGGCGCTGCTTTCGCGCGGTTCCTACTCTATGTGGGCTACGGTTATTCACTACTTCTAA

Genome Context

Tertiary structure

PDB ID

9d14c903e6e519db929d3caa5f962fe4babcdc9ebbd7a78e9c0e9b67bdec9304

ESMFold

Source ESMFold

Method ESMFold

Resolution 0,6009

Oligomeric State monomer

Download PDB

Model Confidence

Very high
pLDDT > 90

High
90 > pLDDT > 70

Low
70 > pLDDT > 50

Very low
pLDDT < 50

Literature

Title	Authors	Date	PMID	Source
Characterization and complete genome sequence of Salmonella phage vB_STy-RN5i1	Imklin,N. and Nasanit,R.	2022-01-10	—	GenBank

Protein

Domains

Domains [InterPro]

Domains [InterPro]

Taxonomy

Coding sequence (CDS)

Coding sequence (CDS)

Genome Context

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)

Model Confidence

Literature