Protein

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Genbank accession
YP_006908864.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,88
TF
Evidence RBPdetect2
Probability 0,87
Protein sequence
MSRELMPKSGIMMPHVVINRDAAVVGVSTVDGVVGAVNLTNKYLQKTDAENTYMTKADGATKVYVADSIAPIMEGALFKADPFVANDVPFRAAGSNGVESVDMIKVTPENTIKIGSYASSVQGVEVHTAGRLQVVDLNDGGVETKYPIYSKRYRPEIDELPFAAIGSYVKDSKGRTIGVNRTGINSDIKQLTQKVTFTQPVTVPDAVGDYDAVTLRQLRNSGGGSGGPTMSGISNFGIGDFHLRDSRAFIPAFEVVSDGQLLNRADYPDLWAYAQLLSPIEDSLWLSDKFKRGRYSKGDGSTTFRVPDRNGVQAGSIRALYARGDGGSSSANGDIFESAAPNITADVTSYSSTSYSQVFGITHGAMYVDNSTFPTGDGDAIPSTGNIAIKGRFNTLHLDASRSNSIYGASSDEIMGRNFVGVWTIRAHGGFTAANTSWSVINSDSTEPPSGTPITGGLVSSKYLVGGVDKYRSSFQLQGSNEVDLSTRITTINDKYSIGAATWDFKLDGKLLFNKSLTPNGTGNAPGNTYLTLANTWMSSSYSGYVGFVGGGAGVSNGGWRNFISLGALIFPDSNHPSAVISQVYDYDLPTGNQPNGDIVRNTYFSAESYDITFGNNSGTTNYIFSKSPVSDERLKHSIKEEGTATALSNLNKMEYKTFIYNYDEKATVRRGFIAQQLEAIDPQYVRKYKTFKGTDTLALDENVLLLDAIAAIQELTKKVEVLEAKLAEK
Physico‐chemical
properties
protein length:730 AA
molecular weight: 78549,61930 Da
isoelectric point:5,57900
aromaticity:0,09452
hydropathy:-0,28288

Domains

Domains [InterPro]
DC_1514
STR
20–315
DC_1514 DC_1985
SSF88874
STR
255–428
SSF88874 IPR030392
IPR030392
CHP
631–686
IPR030392 Coil
YP_006908864.1
1 730
Architecture
STR
RBD
STR 20-428 | RBD 454-730
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_006908864.1
1 730
Domain Start End Length (AA) Confidence
N-terminal 1 73 73 0,9878
Central domain 74 272 200 0,4499
C-terminal 273 730 457 0,8287
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-73
Central
74-272
C-terminal
273-730

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage ECBP2
[NCBI] 		1604355 Uroviricota > Caudoviricetes > Mktvariviridae > Suseptimavirus > Suseptimavirus ECBP2
Host Escherichia coli
[NCBI] 		562 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_006908864.1 [NCBI]
Genbank nucleotide accession
NC_018859.1 [NCBI]
CDS location
range 12839 -> 15031
strand +
CDS
ATGTCTAGAGAATTAATGCCCAAATCTGGGATAATGATGCCTCATGTTGTTATTAACCGAGATGCTGCTGTTGTAGGTGTTTCAACTGTTGATGGTGTAGTTGGTGCTGTCAACCTAACGAATAAGTATTTGCAGAAGACGGATGCTGAAAACACCTACATGACTAAAGCTGATGGAGCTACTAAAGTTTATGTTGCAGATTCTATTGCTCCTATTATGGAAGGTGCTCTATTTAAAGCTGACCCATTCGTAGCTAATGATGTACCTTTCCGTGCTGCTGGTTCTAATGGTGTAGAATCTGTTGACATGATTAAAGTAACACCAGAGAATACTATCAAGATTGGCAGTTATGCTTCTTCTGTTCAAGGTGTAGAGGTCCACACTGCTGGTCGTCTTCAAGTTGTAGATTTGAATGATGGTGGTGTAGAAACTAAATACCCTATCTACTCTAAACGATATCGTCCTGAGATTGATGAACTTCCCTTTGCAGCGATTGGTTCTTATGTCAAGGACTCTAAGGGTCGCACCATTGGTGTAAATCGTACTGGTATCAACTCTGATATCAAACAGCTCACTCAGAAAGTAACCTTTACACAACCTGTAACTGTTCCTGATGCAGTTGGAGATTATGATGCAGTAACTTTGAGACAGCTTCGTAATAGTGGTGGTGGTTCTGGTGGTCCTACCATGAGCGGTATCTCCAACTTTGGTATTGGTGATTTCCATCTTCGTGACAGTCGTGCTTTCATTCCTGCATTTGAAGTTGTGTCTGATGGGCAGCTTTTAAACCGCGCTGACTATCCAGATCTGTGGGCTTATGCACAATTATTGTCACCAATCGAGGACTCTTTGTGGCTTTCTGACAAGTTCAAGCGTGGGAGATATAGTAAAGGGGATGGTTCTACTACCTTCCGTGTTCCTGATAGGAATGGCGTTCAGGCTGGTTCTATTCGTGCTTTATATGCTCGCGGTGATGGTGGTTCTTCTTCTGCTAACGGAGATATTTTTGAATCAGCAGCACCAAACATTACAGCTGATGTGACCTCGTATTCTTCAACCTCATACTCACAGGTATTTGGGATAACTCATGGTGCTATGTATGTAGACAACAGCACTTTCCCAACTGGTGATGGTGATGCTATCCCTTCAACTGGAAACATTGCCATCAAAGGTCGATTCAATACCTTACACCTAGACGCATCGCGATCAAACTCAATTTATGGTGCATCATCTGATGAAATCATGGGTCGTAACTTTGTTGGTGTTTGGACTATTCGTGCTCATGGTGGTTTTACTGCTGCTAATACTTCTTGGTCTGTTATTAACAGCGACTCGACAGAGCCTCCTAGCGGTACACCGATTACTGGTGGTTTAGTTTCTTCTAAATACTTAGTTGGAGGTGTTGATAAGTATCGGTCTTCTTTCCAATTGCAAGGGTCTAATGAAGTTGATTTATCAACTAGAATTACCACCATAAATGATAAATATTCCATCGGAGCTGCAACTTGGGATTTTAAATTAGATGGTAAACTTCTTTTCAACAAGAGTCTAACTCCTAATGGAACAGGAAACGCTCCTGGAAATACCTACTTAACTCTAGCTAATACTTGGATGAGTTCTTCATACTCTGGATATGTAGGGTTTGTTGGTGGTGGGGCTGGGGTTTCTAATGGGGGTTGGAGAAACTTTATTTCTTTAGGGGCTCTAATCTTCCCAGACTCTAACCATCCATCCGCTGTTATTTCTCAAGTTTATGACTATGACCTTCCTACAGGAAATCAACCTAATGGAGACATTGTCAGAAATACCTATTTCAGTGCTGAGAGCTACGACATTACCTTCGGGAACAACAGTGGGACTACTAATTACATCTTCAGTAAATCTCCAGTCTCTGACGAACGACTCAAGCATAGCATTAAGGAAGAAGGGACAGCCACAGCTCTTTCTAACTTAAACAAGATGGAGTATAAAACCTTTATCTATAATTATGATGAGAAAGCAACTGTAAGGCGTGGGTTTATTGCCCAGCAACTTGAAGCTATTGACCCTCAATATGTTAGGAAGTATAAAACTTTCAAAGGGACTGATACCCTAGCTTTAGATGAGAATGTGTTGCTTTTAGATGCAATTGCTGCAATCCAAGAACTTACCAAAAAGGTTGAAGTTCTAGAAGCGAAGTTAGCAGAGAAGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
ca127b59fea8dbf39d21a4f2c091d50802801115026ae616d309b3b566e814b8
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5888
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50