Protein

View in Explore
Genbank accession
YP_010000227.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,67
Protein sequence
MADQDYPQLYQQMKDSAQAMSDASVANKQMMSADDVTDVTIPGYGAKASYSKQIRLKVESLTRIYTDNAQAQAAITAGGIPNGWVMYVQTSLDDSLYGMYFNNNGTLAPILDSNGNVKVQPAGAVVQAALQAPNVINNSVADPAYPQPKLLPITGVNLKYTTASAAMKLENVVESIICPPRPNSSDPSVNYLFTKTVDWIRPGSYVAVSFLIAGQTNLAFTRFIDSTGADIPFTSHLTVRPSGVSELYASIKLGANQKITSIFFGCQQRGTSTTTCEIALPKMAVSERKFVGIGGDVTLAEAQLIDGIVAPNLIYNGFADPAFQLPTLRGGSTPWVSVDSITDATIKALIADYGAYQCLVADPVSSGYVDSLVEIRLDATAFRRQWMSAQFYVYVQPGSGLDPKDEVTRASVFFIDEDNAVTNVVADTVQRVTANLFKVRATYQFTDKKPRRASMGIRNSSTVTRYYVFGFFMAASGQKIREISETPARDPLAGARIDGNAPNRIYNQSADPTLLQPTTYQSIAWTPIASLPTDVQSITQFGAKAALANTRLTTGFKDTLVQIVLTNDVFAGQYVRCEWYVYMKMDAGVSPDDAIKSALAFFWVGSTFTQQVASVINKISTNVYVVQSTFRFLADATRVIFGVRNARRDTDFYVFNPSMATSDLPILRVTQGLVRDPDFNRQVDSRLIGVDWPTVAPIYPARIPVDSPVVGGQNFMLMPDVVILPPDKPLLLQCPQMMMNLTQDMNQFLDFSFRGYDPSGWPYSYETNRTFELDIAKLGSSVSIGYHDRQKSNQWTRRDVTLVKGPTSGTGTKNIALIGDSLTNRGQSARVTALLQARGFTINQLGVLNQQEGGVSEGRESWSAANFVGQRNQLGGVPIVISGDKPGNYNKNPFLFAATPAQLAANPDLCFQNTGSAPELSYADTQTGTFYTFDYRKYLDQQGFPDPHAVSIALAWNDGSQGLTPDIYIKFIKYMVSQIKLAAPACKIGVAPYFHSYYQRARVNTTTSNYVRETLGAYRSRSGSGIYVLPTWAVMPADTEWTSETAGTIDTKSGSFLDTRGDGIHWDPHGRQYSAAQCLFPFYMYALSL
Physico‐chemical
properties
protein length:1089 AA
molecular weight: 119243,40360 Da
isoelectric point:6,39305
aromaticity:0,10560
hydropathy:-0,14674

Domains

Domains [InterPro]
DC_1069
STR
1–831
DC_1069
IPR036514
STR
786–1078
IPR036514
SSF52266
STR
813–1075
SSF52266
YP_010000227.1
1 1089
Architecture
STR
STR 1-1078 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_010000227.1
1 1089
Domain Start End Length (AA) Confidence
N-terminal 1 702 702 0,5438
Central domain 703 901 200 0,5048
C-terminal 902 1089 187 0,8291
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-702
Central
703-901
C-terminal
902-1089

Taxonomy

  Name Taxonomy ID Lineage
Phage Pectobacterium phage MA12
[NCBI] 		2686474 Uroviricota > Caudoviricetes > Casjensviridae > Newforgelanevirus MA12 >
Host Pectobacterium carotovorum
[NCBI] 		554 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010000227.1 [NCBI]
Genbank nucleotide accession
NC_053015.1 [NCBI]
CDS location
range 7122 -> 10391
strand +
CDS
ATGGCAGACCAAGATTACCCGCAGCTATATCAGCAAATGAAGGACTCCGCTCAGGCGATGTCCGACGCCTCGGTGGCCAATAAGCAGATGATGTCTGCGGACGACGTAACGGATGTCACGATACCCGGTTACGGCGCCAAAGCGTCGTATTCTAAACAGATCCGCTTAAAAGTCGAAAGCCTGACCAGGATCTACACAGATAACGCGCAGGCGCAGGCAGCTATTACTGCGGGCGGTATTCCGAACGGCTGGGTAATGTATGTCCAAACGTCCCTGGATGACTCCCTGTACGGAATGTATTTCAACAACAATGGCACCCTTGCTCCTATTCTCGATAGTAATGGTAATGTAAAAGTTCAGCCGGCGGGGGCTGTGGTTCAGGCTGCTCTTCAGGCGCCTAACGTTATCAACAATAGTGTTGCCGATCCGGCGTACCCGCAGCCGAAACTATTACCTATCACTGGTGTTAATCTTAAATACACAACGGCATCTGCAGCCATGAAGCTGGAAAATGTGGTGGAATCTATCATTTGTCCACCGCGTCCTAATAGCTCGGATCCGTCTGTAAATTATCTGTTCACAAAGACAGTAGATTGGATTAGGCCAGGGAGTTATGTCGCGGTTTCATTCCTGATAGCTGGGCAGACCAACCTTGCTTTTACTCGTTTTATTGACAGCACGGGTGCAGATATTCCTTTCACCTCCCATCTGACAGTACGTCCGTCGGGGGTTTCTGAGCTTTACGCGTCAATAAAACTCGGTGCTAACCAGAAAATAACCTCGATATTTTTCGGATGCCAGCAGCGCGGAACCAGTACAACCACCTGCGAAATCGCTCTGCCTAAAATGGCAGTATCAGAACGAAAATTCGTCGGGATCGGCGGCGACGTTACACTAGCAGAAGCCCAACTGATAGATGGCATTGTCGCCCCCAACCTGATCTACAATGGCTTTGCAGATCCTGCCTTCCAGTTGCCAACTCTACGCGGCGGCTCAACCCCGTGGGTTTCTGTTGATAGCATCACGGATGCAACGATAAAAGCCCTTATCGCGGATTATGGTGCTTATCAATGCCTTGTCGCAGATCCTGTATCGTCAGGTTATGTAGATTCTCTGGTAGAGATTCGCCTGGATGCGACGGCTTTCCGCCGCCAATGGATGTCTGCTCAGTTTTATGTATATGTACAGCCAGGGAGTGGATTGGATCCAAAAGATGAGGTAACCCGAGCATCTGTGTTTTTCATTGATGAAGACAATGCGGTAACCAACGTGGTGGCAGATACCGTACAACGGGTCACCGCTAATCTGTTCAAAGTACGGGCTACTTATCAGTTCACCGATAAAAAGCCTCGCCGTGCCTCCATGGGCATCCGGAACTCATCCACCGTGACGCGGTATTATGTGTTCGGGTTTTTCATGGCGGCCTCTGGCCAGAAGATTCGCGAAATATCAGAAACGCCAGCGAGGGACCCGTTAGCTGGAGCACGCATTGACGGCAACGCTCCTAACCGGATTTATAATCAGAGCGCAGATCCTACTTTACTCCAACCGACCACGTATCAAAGTATCGCCTGGACGCCTATCGCAAGTTTGCCAACAGATGTTCAGTCAATCACGCAGTTCGGTGCCAAAGCCGCTCTGGCCAATACACGTTTGACAACCGGGTTTAAAGATACCCTGGTTCAAATCGTACTCACTAACGACGTATTTGCAGGTCAGTACGTGCGCTGCGAGTGGTACGTTTACATGAAAATGGATGCGGGCGTTAGTCCTGATGACGCGATTAAAAGCGCGTTAGCTTTCTTCTGGGTCGGTTCTACGTTTACGCAGCAAGTGGCCTCGGTAATCAATAAGATTTCGACTAACGTTTATGTGGTTCAGTCAACCTTCCGGTTCTTGGCAGATGCTACCCGTGTGATATTCGGGGTGCGTAACGCCAGAAGGGATACAGATTTCTATGTGTTCAATCCATCCATGGCTACGTCAGACCTGCCTATTTTGCGCGTAACCCAAGGCCTGGTTAGGGACCCCGATTTCAACCGTCAAGTCGATTCCAGGCTCATCGGTGTTGACTGGCCAACAGTGGCGCCGATATATCCGGCACGTATCCCTGTTGATTCCCCTGTGGTTGGCGGTCAGAACTTCATGCTGATGCCTGACGTGGTTATCCTGCCGCCGGATAAGCCACTGTTGCTTCAGTGTCCTCAAATGATGATGAACCTGACGCAGGACATGAATCAGTTTCTGGACTTCTCTTTCCGGGGGTATGACCCATCGGGCTGGCCGTACAGCTACGAGACTAATCGGACTTTCGAACTGGATATTGCTAAGCTGGGTTCTTCTGTGAGCATTGGCTACCATGACAGGCAGAAATCGAATCAGTGGACTCGGCGCGATGTGACGTTGGTGAAAGGGCCAACGTCGGGGACGGGCACGAAGAATATCGCGTTGATCGGGGATTCCTTGACCAATAGGGGTCAATCAGCACGTGTCACTGCATTATTGCAGGCGAGAGGATTCACCATCAATCAGCTAGGTGTTCTTAACCAACAAGAAGGCGGGGTATCAGAAGGGCGCGAGTCCTGGTCCGCAGCTAACTTCGTTGGGCAAAGAAACCAGTTGGGCGGCGTACCTATTGTCATCAGTGGCGATAAGCCGGGTAACTACAACAAAAATCCGTTCCTCTTCGCTGCTACGCCTGCGCAACTGGCGGCTAACCCGGATCTATGTTTCCAAAATACCGGGTCTGCACCGGAACTATCGTACGCCGATACGCAGACGGGGACGTTTTACACGTTTGATTATCGAAAATACCTGGACCAGCAAGGGTTCCCGGACCCGCATGCAGTATCTATCGCGCTGGCATGGAACGACGGGTCGCAAGGACTGACGCCGGACATTTACATCAAGTTCATAAAGTATATGGTGAGTCAGATCAAACTGGCGGCACCGGCGTGTAAGATAGGCGTGGCACCGTACTTCCACTCTTACTATCAACGCGCACGAGTTAACACAACCACGTCCAACTATGTGCGCGAAACCCTGGGCGCGTATCGCAGCCGGTCTGGTTCGGGGATCTACGTTCTGCCTACATGGGCCGTAATGCCTGCTGATACCGAGTGGACGAGCGAAACGGCGGGAACAATCGATACCAAGTCAGGGTCATTCCTTGATACTCGCGGTGACGGTATTCACTGGGACCCGCACGGCAGACAGTACAGCGCTGCACAGTGTCTGTTCCCGTTCTACATGTATGCGTTAAGTCTATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
8dbfd2f3538792c70f85800edb6c33e38bd7a87486260a1b0c3e75dfa80c842d
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7185
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50