Protein

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Genbank accession
YP_009609575.1 [GenBank]
Protein name
tail fiber protein proximal subunit
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,71
TF
Evidence RBPdetect2
Probability 0,54
Protein sequence
MADILKPAFRATSGLDAGGEKVINVSKADFNTKTDGVNVEFFIEENTIQEYDSTRGYRKNFAVMFDGRIWTAKEDIAAPAGTFQEPRWTALRTDAKWKYVTSGANNALKSGDYISVSTETSDVGFVLPNTPQDGDTIVIKDVGGKVGYNSLKVKISNQSIIRFNVPVSEVIITKARAESIFIFSNRQWQFYSYEEDEHAIRVTSAAEHRATAGEHIFRTHANPGLVKVMLPKFANNGDIIYFTDLDGLGPIHHLQLRTFDDSTSIGKAGVHQAEYRTSGDGLVVFDAAEKVWRTWDGDLRTRLRIIRDDVKLMPNESVMVFGTNNAIEKTINVELPLSVALGDKVRIAMNYMRKGQKVVIKAAEGDTIATSKSLLQFPKRSEYPPEVEWVQVTSLTFDGTQDYVPIIELSYIEDGTKHYWVVSTNDPTVERVDSKTDETRKRLGVIALASQTQANVDKENNPEKELAITPETLANRTSTESRRGISRLATTAEVVQDSNFAFLDDVIVTPKKLNQRVATETSRGLAEIATQTETNQGTDDTTIITPKKLEARRATENMAGIAKLVSTVGTTAGVDRATKGTNVYDYDNNTDIVTPKSLAQQKATYTEQGSLFIATANEVISGVSQEGFQTAVTPVELHKKTATETRIGFSELATQAETDAGTDDFRIVTPKKLNDRKAREDLTGLARIATQVEFDAGTLDNVISTPLKVKTHFNDTARTSVVTDSGLVEQGTLWNHYTLDIQEASETQRGTARLATQGEVDTGTDDKTVVTPLKLHKKKATESTEGIVKIATQVETVAGTSSITAVSPKNLKHVIQVEKTWEASPILRGLVKISENAITWEGNNVDGSTKPLENYEKSGYAISPYELNKTLANYLPKMGQAEDSRNLDGLDSSQFIRRDIDQTVNGKLTLTKETTVSAPIVSTSTAKFDSVTSVKSVTIGDGTGDAVFNMLGKDNPWNVSSLTSKETLEFKSGDTNALVINKNGNLTSAGQIAAPSVDVSKSYKLNGVNVLTSETIGVTPVVSVGSTTQKLVIKTVDAGKIDIYDKDSPSTPYTVLTTKNAVDIVGNNFVKKIGDNMSGRLTVNAAMSIIMDQDKAMLPLSSETIGTWSTEITKKTHYDKLPGYVVPVFVEGEEGGSTGIVERYEEVKSIGTMSQFGVSAAYTYRIWTPRPQVPQDNHNAVSMYMQMWDSARNTWGQWSRMFTSEAPPTAADIGAVSTAGSAFDNLKIHKWLQIGNVRIEPDETTRTVKFTWVDNP
Physico‐chemical
properties
protein length:1256 AA
molecular weight: 137579,60400 Da
isoelectric point:5,47151
aromaticity:0,07006
hydropathy:-0,38973

Domains

Domains [InterPro]
DC_1986
ATT
10–138
DC_1986 DC_1209
IPR048391
ATT
1103–1202
IPR048391
YP_009609575.1
1 1256
Architecture
ATT
STR
ATT
STR
ATT 10-138 | STR 343-1102 | ATT 1103-1202 | STR 1203-1244 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009609575.1
1 1256
Domain Start End Length (AA) Confidence
N-terminal 1 1017 1017 0,7991
Central domain 1018 1216 200 0,1078
C-terminal 1217 1256 39 0,6550
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-1017
Central
1018-1216
C-terminal
1217-1256

Taxonomy

  Name Taxonomy ID Lineage
Phage Serratia phage CHI14
[NCBI] 		2006941 Uroviricota > Caudoviricetes > Pantevenvirales > Tevenvirinae > Winklervirus
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009609575.1 [NCBI]
Genbank nucleotide accession
NC_041996 [NCBI]
CDS location
range 152261 -> 156031
strand +
CDS
ATGGCCGATATTTTAAAACCTGCTTTCCGTGCCACGTCCGGCCTTGATGCAGGTGGCGAAAAAGTTATCAACGTTTCTAAAGCTGATTTCAATACAAAAACTGATGGTGTAAACGTTGAATTCTTTATTGAAGAAAACACCATCCAAGAATATGATAGTACTCGTGGATATCGTAAGAATTTTGCAGTGATGTTTGATGGACGTATCTGGACTGCAAAAGAAGATATCGCAGCTCCAGCTGGTACGTTCCAAGAACCTCGTTGGACAGCATTACGTACAGATGCTAAATGGAAGTATGTAACTTCTGGTGCTAATAACGCACTTAAATCAGGTGATTACATCTCTGTATCAACCGAAACAAGTGATGTTGGATTTGTTTTACCTAATACTCCACAAGATGGAGACACAATAGTAATTAAAGATGTTGGCGGTAAGGTTGGGTATAACTCATTAAAGGTTAAAATTTCTAACCAATCTATTATCCGTTTTAATGTTCCTGTTTCTGAAGTAATTATTACTAAAGCACGTGCTGAAAGTATTTTCATTTTTAGTAATAGACAATGGCAATTCTATTCTTATGAAGAAGATGAACATGCTATCAGAGTAACTTCTGCAGCTGAACATAGAGCAACGGCTGGTGAACATATTTTCCGTACCCATGCAAACCCAGGTCTAGTTAAAGTAATGCTGCCTAAGTTTGCTAATAATGGTGACATCATTTATTTTACCGATCTTGACGGGTTAGGTCCTATTCATCATTTACAGCTTCGTACTTTTGACGATAGTACAAGTATTGGTAAAGCTGGGGTTCATCAGGCTGAATACCGTACTTCAGGTGATGGTTTAGTTGTATTTGATGCTGCTGAAAAAGTTTGGCGCACTTGGGATGGCGATCTCAGGACTCGTCTTCGTATTATTCGTGATGATGTTAAACTTATGCCTAACGAAAGTGTTATGGTGTTTGGTACGAATAATGCTATAGAAAAAACTATTAATGTTGAATTGCCATTATCAGTTGCATTAGGCGATAAAGTTCGTATCGCTATGAACTATATGCGTAAAGGACAGAAAGTTGTTATTAAAGCGGCTGAAGGCGATACAATAGCTACTTCTAAATCTTTACTTCAATTCCCTAAACGTTCAGAATATCCACCTGAAGTAGAATGGGTACAAGTTACTTCATTAACCTTTGACGGTACTCAGGATTATGTTCCTATTATTGAACTTTCTTATATTGAAGATGGAACTAAACATTATTGGGTAGTTTCAACAAACGATCCAACAGTTGAACGTGTCGATTCTAAAACAGATGAAACTCGTAAACGTTTAGGCGTAATTGCACTGGCGAGCCAGACTCAAGCTAACGTTGATAAAGAAAACAATCCAGAAAAAGAACTTGCTATTACTCCTGAAACTTTAGCAAATCGTACTTCTACCGAATCAAGACGTGGTATTTCTCGTTTAGCTACTACGGCAGAAGTTGTACAGGATTCTAACTTTGCTTTCTTAGATGATGTCATTGTTACTCCTAAAAAACTGAATCAACGTGTTGCTACTGAAACTTCTCGTGGTTTAGCCGAAATAGCTACTCAAACTGAAACCAACCAAGGAACAGATGATACAACTATTATAACGCCAAAGAAATTAGAAGCACGTCGTGCAACTGAAAATATGGCTGGTATCGCTAAACTTGTTTCTACAGTTGGAACTACTGCAGGCGTAGATCGTGCAACTAAAGGAACCAATGTCTATGATTATGACAATAACACTGATATTGTAACTCCTAAGTCCCTGGCACAACAGAAGGCGACTTATACAGAACAGGGTTCATTGTTCATTGCCACAGCTAATGAAGTTATTTCAGGCGTCTCTCAGGAAGGATTCCAGACCGCAGTTACTCCTGTTGAATTGCATAAGAAAACTGCTACTGAAACTCGTATTGGATTTAGTGAACTTGCTACGCAAGCAGAAACTGATGCTGGTACTGATGATTTTAGAATTGTTACACCTAAGAAATTGAATGACCGTAAGGCTCGTGAAGATTTGACTGGTTTGGCAAGAATTGCAACACAAGTTGAATTTGATGCAGGTACTTTAGATAATGTTATTTCAACTCCGTTGAAAGTTAAAACACATTTCAATGATACTGCCCGTACTTCTGTTGTAACCGATAGTGGTTTAGTAGAACAAGGAACTCTCTGGAACCATTATACCCTTGATATCCAAGAAGCATCTGAAACCCAACGTGGCACAGCTCGCCTGGCAACTCAAGGTGAAGTTGATACTGGAACAGATGATAAGACTGTTGTTACACCTTTGAAACTGCATAAGAAGAAAGCAACCGAATCTACTGAAGGTATCGTTAAAATCGCTACCCAAGTTGAAACAGTAGCTGGAACTTCTTCTATTACAGCTGTTTCTCCTAAAAATCTGAAACACGTTATCCAAGTAGAAAAAACTTGGGAAGCATCGCCAATTCTACGTGGCTTAGTTAAGATTTCAGAAAATGCTATCACTTGGGAAGGTAATAATGTAGATGGTTCAACTAAACCTCTTGAAAATTACGAGAAGTCTGGCTATGCTATTTCTCCTTATGAATTAAACAAGACTTTAGCGAATTATCTCCCTAAAATGGGTCAAGCCGAAGATTCACGTAATTTAGATGGACTAGATTCATCTCAGTTCATTCGTCGTGATATCGACCAAACAGTTAATGGTAAATTGACTCTTACTAAAGAAACGACAGTTTCGGCTCCTATTGTTTCAACTTCTACTGCGAAGTTTGATTCTGTAACGAGCGTTAAGAGTGTTACTATTGGCGATGGAACGGGTGATGCTGTTTTCAATATGCTAGGTAAAGACAATCCTTGGAATGTTTCTTCACTGACTTCTAAAGAAACCTTGGAATTCAAATCAGGAGATACTAACGCATTAGTTATCAATAAAAATGGTAACTTGACTTCAGCAGGACAAATTGCCGCTCCTTCAGTAGATGTTTCAAAATCTTATAAGCTGAACGGTGTAAACGTTTTAACTTCAGAAACAATTGGTGTTACCCCAGTCGTTTCAGTTGGTTCAACTACTCAAAAATTAGTTATCAAAACAGTTGATGCTGGAAAAATCGATATCTATGATAAAGATTCTCCATCAACTCCTTATACTGTTCTGACTACTAAAAACGCAGTTGATATTGTTGGCAATAACTTTGTTAAGAAAATTGGTGATAACATGAGCGGTCGCTTAACAGTGAACGCTGCAATGTCAATCATCATGGACCAAGACAAAGCCATGCTTCCATTATCTTCTGAAACAATCGGTACTTGGTCTACTGAAATCACTAAGAAAACCCATTACGATAAATTACCTGGTTATGTTGTCCCAGTATTTGTTGAGGGTGAAGAAGGCGGTTCTACCGGTATAGTTGAGCGTTATGAAGAAGTTAAATCAATAGGAACTATGTCTCAGTTCGGTGTATCTGCAGCATATACTTATCGCATTTGGACTCCTCGTCCACAGGTTCCACAGGATAACCATAATGCGGTTTCAATGTATATGCAGATGTGGGATTCTGCTCGTAACACATGGGGTCAATGGTCTCGTATGTTTACTTCAGAGGCTCCTCCTACTGCGGCTGATATCGGTGCTGTTTCTACCGCTGGTTCTGCATTCGATAACTTGAAAATCCATAAATGGCTTCAGATCGGTAATGTACGTATTGAACCAGACGAAACAACTCGTACTGTTAAATTCACTTGGGTTGATAATCCATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
5325225723674b8b612209b025355319f0f129f7e3847c91bccd8697325f0082
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5688
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Environmental T4-family bacteriophages evolve to escape abortive infection via multiple routes in a bacterial host employing altruistic suicide through Type III toxin-antitoxin systems Chen,B., Salmond,G.P.C., Akusobi,C. and Fang,X. — — GenBank