Protein

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Genbank accession

YP_007349031.1 [GenBank]

Protein name

tail sheath protein

RBP type

TSP

Evidence DepoScope

Probability 1,00

Protein sequence

MTTNTFSVAPSVQWTERDATLQTTPSVEVNGASVGTFQWGEVELPVLVTGGPTGLVKRFFKPSNDNYMDFLVVEDFLKYSSTAWVVRMVGPLAKNAVTKGQTAITIKNKLDFEGATPSASITWAGRYPGDLANDIAINICDAAHFEAWEYNSQFAYAPQAGEFHVVVVDKVGRITDSAGAVSQVQRFEFAGLATAAGKIVLAGVDVAYVKDDTPEIVATKAATVLGALTGEDAVFENIVAKSNTLTVSFKAVGPQAESTVVVDDKGITGTVSTLTVGSSGTIISGEKYELLQLTPGAKRSDSSNAYYKDVINQTSNWVYVFADTLANGLIELDGGVNDNTITRNAGFDLLRNAEAYSAKPIFGACNTISEQQAAIDASGARRDSVTFVSPLRDAVVNNRGRETESVVAWRQSLVRDSSYFFMDDNWAYVYDKYNGVNRWIPACGGTAGVWARTIQIAGIYKSPAFHNRGKYSNYIRMAWSADSDQRAQLYKNQINSIVTFSTEGIVLYGDKTGLTRPSAFDRINVRGTFIMAETNIAAIAKYYLGENNDAFTRQLFTNAVTPYVRQLIGMGAVVDGKVKCDDDNNPAAVVAANQMVAGIWLKPEYSINWVYLDFAAVRPDISFEEVENGGGIVAAS

Physico‐chemical properties

protein length:	636 AA
molecular weight:	68791,30260 Da
isoelectric point:	4,94871
aromaticity:	0,10377
hydropathy:	-0,07437

Domains

Domains [InterPro]

IPR052042
Unmapped
25–596

IPR052042

G3DSA:3.40.50.11780
STR
29–144

G3DSA:3.40.50.11780 G3DSA:3.40.50.11780 IPR020287

DC_1098
STR
90–346

DC_1098 IPR020287

G3DSA:3.40.50.11780
STR
299–485

G3DSA:3.40.50.11780

YP_007349031.1

1 636

Architecture

STR

TAS

STR 29-485 | TAS 517-613 |

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Domains [InterPro]

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
IPR052042	Unmapped	-	25	596	InterPro	Tail sheath structural protein	-	-	-	-
G3DSA:3.40.50.11780	STR	G3DSA:3.40.50.11780	29	144	Merged direct domain	G3DSA:3.40.50.11780	Central	Low	Positional only	39 proteins / 39 hits
DC_1098	STR	DC_1098	90	346	Novel HMM	DC_1098	Central	Low	Positional only	21 proteins / 21 hits
G3DSA:3.40.50.11780	STR	G3DSA:3.40.50.11780	299	482	Merged direct domain	G3DSA:3.40.50.11780	Central	Low	Positional only	39 proteins / 39 hits
G3DSA:3.40.50.11780	STR	G3DSA:3.40.50.11780	299	485	Merged direct domain	G3DSA:3.40.50.11780	Central	Low	Positional only	39 proteins / 39 hits
IPR020287	TAS	DC_0666	517	613	InterPro cluster	Tail sheath protein, C-terminal domain	C-terminal	High	Text match	43 proteins / 43 hits
IPR020287	TAS	DC_0666	517	610	InterPro cluster	Tail sheath protein, C-terminal domain	C-terminal	High	Text match	43 proteins / 43 hits

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout

N-terminal

Central

C-terminal

YP_007349031.1

1 636

Domain	Start	End	Length (AA)	Confidence
N-terminal	1	257	257	0,6951
Central domain	258	456	200	0,1224
C-terminal	457	636	179	0,1043

Note: Constraints were applied during segmentation.
Fixed 26 C-terminal predictions appearing before Central domain

Legend: N-terminal Central domain C-terminal

3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring

N-terminal
1-257

Central
258-456

C-terminal
457-636

Taxonomy

	Name	Taxonomy ID	Lineage
Phage	Serratia phage phiMAM1 [NCBI]	1262513	Uroviricota > Caudoviricetes > Pantevenvirales > Miltonvirus > Miltonvirus MAM1
Host	Serratia sp. [NCBI]	616	Bacteria > Proteobacteria > Gammaproteobacteria > Enterobacteriales > Enterobacteriaceae > Serratia

Coding sequence (CDS)

Genbank protein accession

YP_007349031.1 [NCBI]

Genbank nucleotide accession

NC_020083 [NCBI]

CDS location

range 52539 -> 54449
strand +

CDS

ATGACTACGAATACTTTCAGTGTTGCACCATCGGTCCAGTGGACTGAACGTGATGCAACGCTTCAAACCACACCAAGTGTTGAGGTTAACGGCGCGTCCGTTGGTACTTTCCAATGGGGTGAAGTCGAATTGCCTGTGCTGGTCACTGGTGGTCCAACTGGTCTGGTGAAGCGTTTCTTCAAACCTTCTAACGACAACTACATGGACTTCCTGGTTGTTGAAGACTTCCTGAAGTACAGCTCCACTGCGTGGGTTGTGCGTATGGTTGGTCCTCTGGCCAAGAACGCCGTGACCAAAGGTCAAACCGCGATCACGATCAAGAACAAGCTGGACTTCGAAGGGGCTACCCCGTCGGCTTCCATCACTTGGGCTGGCCGTTATCCAGGCGACCTGGCGAACGATATTGCCATCAACATCTGTGATGCCGCACACTTCGAAGCATGGGAGTACAACAGCCAATTCGCATATGCTCCTCAGGCTGGCGAGTTCCACGTTGTTGTTGTCGACAAAGTAGGCCGCATCACCGACAGTGCCGGTGCTGTGAGCCAGGTTCAGCGCTTCGAATTTGCTGGTCTGGCAACTGCCGCCGGTAAGATCGTGCTGGCTGGTGTTGACGTCGCCTATGTCAAAGATGATACCCCTGAAATCGTAGCCACCAAGGCCGCGACTGTTCTGGGCGCGCTGACTGGTGAAGATGCTGTTTTCGAGAACATCGTAGCCAAGTCCAACACCCTGACCGTCAGCTTCAAGGCCGTTGGCCCACAGGCTGAGAGCACTGTTGTGGTCGACGACAAGGGCATCACTGGTACTGTCTCCACTCTGACTGTTGGTTCCTCTGGTACCATCATCAGCGGAGAGAAGTATGAGCTGCTGCAGCTGACTCCAGGCGCCAAGCGTTCTGACAGTTCCAACGCCTACTACAAAGACGTGATCAACCAGACCTCCAACTGGGTGTATGTGTTCGCAGATACCCTGGCCAACGGTCTGATCGAACTGGACGGCGGCGTGAACGATAACACTATCACCCGCAACGCCGGTTTCGACCTGCTGCGTAACGCTGAGGCATATTCGGCCAAGCCAATCTTCGGGGCATGCAACACCATCTCCGAACAACAGGCTGCTATCGATGCCTCTGGCGCGCGTCGCGACTCCGTGACCTTTGTCAGCCCACTGCGTGACGCTGTTGTCAACAACCGTGGTCGTGAGACTGAGTCGGTTGTTGCATGGCGCCAGAGCCTGGTTCGTGACTCCAGCTATTTCTTCATGGACGACAACTGGGCGTATGTGTATGACAAGTACAACGGCGTGAACCGCTGGATCCCGGCCTGTGGCGGTACTGCTGGTGTGTGGGCGCGTACCATCCAGATCGCTGGTATCTACAAATCCCCAGCGTTCCACAACCGTGGCAAATACAGCAACTACATCCGCATGGCGTGGTCTGCTGACTCTGACCAGCGCGCTCAGCTGTACAAGAACCAGATCAACAGCATCGTTACCTTCAGCACTGAAGGCATCGTGTTGTACGGCGACAAGACTGGTCTGACCCGTCCAAGCGCATTCGATCGCATCAACGTGCGTGGTACGTTTATCATGGCCGAGACCAACATCGCAGCCATTGCTAAATACTACCTGGGTGAGAACAACGACGCGTTCACGCGCCAGCTGTTCACCAACGCCGTTACCCCATACGTTCGCCAGCTGATCGGCATGGGCGCTGTGGTTGATGGTAAGGTCAAGTGCGACGACGATAACAACCCTGCGGCGGTTGTCGCAGCTAACCAGATGGTTGCCGGTATCTGGCTCAAACCAGAGTACAGCATCAACTGGGTGTATTTAGATTTTGCTGCCGTCCGCCCAGACATTTCCTTCGAGGAAGTGGAAAACGGTGGTGGTATCGTGGCCGCTTCGTGA

Genome Context

Tertiary structure

PDB ID

27a35d2b233eca8020cdb0db70166dcd984b0f4ba84fd7ebd745ad470943ea8f

ESMFold

Source ESMFold

Method ESMFold

Resolution 0,8707

Oligomeric State monomer

Download PDB

Model Confidence

Very high
pLDDT > 90

High
90 > pLDDT > 70

Low
70 > pLDDT > 50

Very low
pLDDT < 50

Protein

Domains

Domains [InterPro]

Domains [InterPro]

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

3D Structure with Domain Coloring

Domain Coloring

Taxonomy

Coding sequence (CDS)

Coding sequence (CDS)

Genome Context

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)

Model Confidence