Protein

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Genbank accession
GENB_52d63c7ce62e [GenBank]
Protein name
tail spike protein
RBP type
TSP
Evidence DepoScope
Probability 0,61
Protein sequence
MTAVSQTETRSSANFSLFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGYGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGGALLLAAILPVSAPFKFALLVIGRLILGFGESQLLTGALTWGLGIVGPKHSGKVMSWNGMAIYGALAVGAPLGLLIHSHYGFAALAITTMVLPLLAWACNGTVRKVPALAGERPSLWSVVGFIWKPGLGLALQGVGFAVIGTFVSLYFASKGWAMAGFTLTAFGGAFVVMRVMFGWMPDRFGGVKVAIVSLLVETVGLLLLWQAPGAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIALGVSGPLAGMLATTFGYSSVFLAGAISAVLGIIVTILSFRRG
Physico‐chemical
properties
protein length:392 AA
molecular weight: 40512,75050 Da
isoelectric point:10,10144
aromaticity:0,10714
hydropathy:0,94235

Domains

Domains [InterPro]
NF009048
Unmapped
1–392
NF009048
NF003477
Unmapped
5–391
NF003477
IPR050171
Unmapped
6–390
IPR050171
IPR036259
STR
10–387
IPR036259
G3DSA:1.20.1250.20:FF:000269
Unmapped
10–387
G3DSA:1.20.1250.20:FF:000269
IPR036259
STR
14–391
IPR036259
IPR037541
Unmapped
17–392
IPR037541
IPR011701
STR
20–249
IPR011701
cd17489
STR
20–389
cd17489
IPR020846
STR
169–392
IPR020846
GENB_52d63c7ce62e
1 392
Architecture
STR
STR 10-392
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
GENB_52d63c7ce62e
1 392
Domain Start End Length (AA) Confidence
N-terminal 1 10 10 0,0084
Central domain 11 252 243 0,2695
C-terminal 253 392 139 0,1916
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-10
Central
11-252
C-terminal
253-392

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage 500465-2
[NCBI] 		2716352 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Escherichia coli
[NCBI] 		562 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
CP025901.1_CDS_[complement(26938..28116)] [NCBI]
Genbank nucleotide accession
CP025901.1 [NCBI]
CDS location
range 26938 -> 28116
strand -
CDS

  




        

        
      
    
  






  

  
  

    
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Tertiary structure


  



  

    

      
        
          
            
              

                

                  

                    

                      
PDB ID

                      
20e783790ae7340843e5b9704fc8dd5bb1b7c1ef21f2370185edf96bc3019f13

                    

                    
                      ESMFold
                    
                  

                  

                  

                    

                      Source
                      ESMFold
                    

                    

                      Method
                      ESMFold
                    

                    

                      Resolution
                      0,9029
                    

                    

                      Oligomeric State
                      monomer
                    

                    
                  

                  

                    
                      Download PDB
                    
                  

                  
                  
                  
                

                
                
                

                  

                    
                      
Model Confidence

                      

                        

                          

                          Very high
pLDDT > 90
                        

                        

                          

                          High
90 > pLDDT > 70
                        

                        

                          

                          Low
70 > pLDDT > 50
                        

                        

                          

                          Very low
pLDDT < 50