Protein

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Genbank accession
XHO50631.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,90
Protein sequence
MPSLFLPVDGQWKEVSQFHVEKDNQWEEASIRLVEHNGKWRETFNNEGVKTDNIVEIHELKFRAGNNLQGDLRLDGQGLSDIIPTKPAVGAMYSFRSTLRDYFDNFGKVDQFGTELTLPAEQDGIPCYAMDASKRQYMTANNSTRGYYDFLGLIGSNTPWGHWELGGKFKPSTWPNNEMDSICVYFTGTPTQCVSVIYNGAGTLFGVVRNGNKYSVVMLPNAVKLNEWTGFCFRHKQGGLIELMLHDERTHAVQLTTGYWKPAPHIPIKMGNGLTWTAETVADAFFLPENTHADIDIVDNGLRLNYTGTAYRGSQPSHEMSPNTGRYYIEIFHETAFDMHYGVAEPGARLDTGAGVVGWCVNTINGRKFDHQTGGGSTWSTATPENSTIGMLYDSNNGRLEIYVNGVKRPNPFWDNTIQVPVKFIISGRAKDATTQIFAPRVNLDPSTWAHKPDGDDIKPVPLSRVVGGIGNQETFFTGYVSDFFIRSSPMVSDAHIYAVIDPKARFKIKFTSIANGDIYDATSNVIIQKGNHCIMTIPDIPVGNYWLTAEKAGQDVSTKKFFTVTTFSQEQTALDINMESSSIEDIRNGLMVAHKGWGGTNGGCVQDNVLLDMKNKIMRITAYGNLYTGPVKGVDRVGVPNGFNKRIGACVATRGYHGPGSYRVLCKFPEKTGVCSAFWTFHYEEGYPGSQLFNDHIADGLHVAGTEADGFYTVRNHEIDIEVPTALKTDQDQEDVSYLNARFNTWHGERRNWAVKNNDVPIHDPMYSPTNDPAYWSEYTDDFIKHDVALNDGQYHEVRFDWHLDNDPRVVYYVDGVEKHTVRTHVPDIPGRFWVGLWFPSASTLWAGKDADWVVQHMDVKRIQIIPFTDEIPNARQITETYPWDVYRDFKHIIYE
Physico‐chemical
properties
protein length:897 AA
molecular weight: 101061,97640 Da
isoelectric point:5,62310
aromaticity:0,11929
hydropathy:-0,44660

Domains

Domains [InterPro]
DC_1762
ATT
1–295
DC_1762 DC_1645 G3DSA:2.60.120.200
DC_1713
STR
251–457
DC_1713 cd00413
IPR001870
STR
264–444
IPR001870 G3DSA:2.60.120.200
IPR043136
STR
276–448
IPR043136 IPR013320
IPR013320
STR
280–409
IPR013320
XHO50631.1
1 897
Architecture
ATT
STR
ATT 1-295 | STR 296-870 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XHO50631.1
1 897
Domain Start End Length (AA) Confidence
N-terminal 1 84 84 0,8914
Central domain 85 315 232 0,4173
C-terminal 316 897 581 0,5313
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-84
Central
85-315
C-terminal
316-897

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage vB_VpaS_R29Z
[NCBI] 		3348376 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Vibrio parahaemolyticus
[NCBI] 		670 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XHO50631.1 [NCBI]
Genbank nucleotide accession
PQ289635 [NCBI]
CDS location
range 43966 -> 46659
strand +
CDS
ATGCCCTCTTTATTTCTACCAGTAGACGGGCAATGGAAAGAGGTTTCCCAATTCCACGTGGAAAAAGACAACCAGTGGGAGGAAGCCTCTATTCGTCTTGTCGAACATAACGGTAAGTGGCGAGAGACGTTCAACAACGAGGGTGTTAAAACCGATAACATTGTTGAAATTCATGAGCTCAAATTCCGTGCGGGTAATAACCTCCAAGGTGACCTACGCCTTGATGGGCAAGGGTTGTCTGACATTATCCCTACTAAGCCCGCAGTTGGCGCGATGTATTCTTTCCGTTCTACTTTGCGGGATTACTTCGATAACTTCGGTAAGGTCGACCAGTTTGGCACAGAACTAACTCTACCAGCAGAGCAGGACGGGATTCCGTGTTATGCCATGGACGCGTCTAAGCGCCAGTACATGACAGCGAACAACTCCACTCGCGGTTACTACGACTTCCTAGGTTTAATTGGCTCAAATACGCCTTGGGGTCACTGGGAGTTGGGCGGCAAGTTCAAACCGTCCACTTGGCCAAACAATGAGATGGATTCCATTTGTGTTTACTTCACGGGAACACCAACTCAGTGTGTAAGCGTCATTTACAACGGAGCGGGTACGCTATTCGGTGTGGTGCGAAACGGCAATAAGTACAGCGTGGTCATGTTACCTAATGCAGTAAAGCTCAACGAATGGACGGGGTTCTGTTTCCGTCACAAGCAAGGTGGTCTTATTGAGTTAATGCTTCATGATGAGCGTACTCACGCAGTGCAATTGACCACAGGGTACTGGAAGCCAGCCCCTCACATTCCGATTAAAATGGGTAACGGTCTTACATGGACAGCTGAAACGGTTGCGGACGCGTTCTTCCTGCCTGAGAATACCCACGCTGACATTGATATTGTTGACAACGGGTTGCGCTTAAACTACACGGGCACAGCGTATCGTGGTTCGCAACCGTCGCACGAAATGTCTCCAAACACTGGTCGCTACTACATTGAAATATTCCACGAAACCGCGTTCGATATGCACTACGGTGTTGCTGAGCCGGGCGCGCGTTTGGACACTGGTGCGGGTGTTGTTGGTTGGTGTGTTAACACAATTAACGGACGTAAATTTGACCATCAGACAGGGGGTGGTAGTACATGGTCTACTGCAACACCTGAGAACAGTACCATCGGTATGTTGTACGATTCAAACAATGGTCGTTTGGAAATTTACGTTAACGGTGTTAAGCGTCCAAATCCATTCTGGGACAACACAATCCAAGTTCCAGTAAAGTTCATTATCTCAGGTCGAGCAAAAGACGCCACAACTCAGATCTTTGCGCCACGTGTTAACTTAGATCCGTCCACTTGGGCGCACAAGCCCGATGGTGATGATATTAAACCTGTACCCCTGTCTCGCGTTGTTGGTGGTATTGGTAATCAGGAAACGTTCTTTACTGGTTATGTGAGTGACTTCTTTATTCGCAGTTCACCGATGGTTAGTGATGCGCACATTTACGCGGTTATTGACCCGAAAGCTCGTTTCAAGATTAAATTTACAAGCATTGCAAACGGTGACATCTACGATGCAACTTCCAACGTGATTATCCAAAAAGGTAATCACTGCATTATGACAATCCCAGACATTCCCGTTGGCAACTACTGGTTAACAGCGGAGAAAGCGGGACAGGATGTATCCACCAAAAAGTTCTTTACTGTTACGACGTTTTCCCAAGAGCAAACAGCGTTGGATATCAACATGGAAAGCTCGTCTATTGAGGATATTCGCAACGGGTTGATGGTTGCTCATAAGGGTTGGGGCGGTACGAACGGTGGCTGTGTGCAGGACAACGTTCTGCTAGACATGAAAAACAAAATCATGCGAATTACAGCCTACGGGAACCTGTATACCGGACCTGTAAAGGGTGTTGACCGTGTTGGTGTACCTAACGGGTTCAACAAGCGAATCGGGGCGTGCGTAGCAACACGTGGTTATCACGGGCCAGGCTCGTATCGTGTGCTTTGTAAGTTCCCAGAAAAGACGGGTGTGTGTTCCGCGTTTTGGACGTTCCACTACGAAGAGGGTTACCCAGGATCTCAATTGTTCAATGACCACATAGCTGACGGGTTGCACGTTGCGGGCACGGAAGCTGACGGTTTCTACACTGTGAGAAACCACGAGATTGATATTGAGGTTCCAACTGCGCTTAAGACGGACCAAGATCAAGAAGATGTATCTTATTTGAACGCACGTTTTAACACGTGGCACGGAGAGCGTCGAAACTGGGCGGTTAAGAATAATGATGTTCCAATACATGACCCGATGTACAGTCCAACAAACGACCCTGCGTACTGGTCCGAGTACACAGATGATTTTATTAAGCACGACGTTGCTTTAAATGATGGACAATATCATGAGGTGCGCTTTGATTGGCATCTGGACAACGATCCGAGAGTGGTGTATTATGTAGATGGTGTTGAAAAGCACACGGTTCGTACACACGTGCCTGACATTCCTGGACGCTTTTGGGTTGGCTTATGGTTCCCAAGTGCTTCCACTTTGTGGGCGGGTAAGGATGCGGATTGGGTTGTTCAGCACATGGATGTTAAGCGCATTCAAATTATACCATTTACAGATGAGATACCTAATGCTCGTCAAATCACAGAAACGTACCCTTGGGACGTTTATAGAGACTTTAAGCATATAATTTATGAGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
56666b8ca648124c20722331d9df47eebc1f47a85966032ae97ab7f8e54013ff
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,2826
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50