Protein

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Genbank accession
WJZ48409.1 [GenBank]
Protein name
neck protein
RBP type
TSP
Evidence RBPdetect
Probability 0,52
Protein sequence
MTDIYINNGGINYTSTPIIAISTSPSGGNASAIGIMSTSEGTGKLYLSNVLITNPGYGYTENPTVRFIGGGGTGIAVTVGISTFNSVGIITITSGGTRYVTNPTVTFVGNVGTGMSATANAYVTAGVVTSIILTNAGFGYTVAPTIVIGPPAGVGTGNFTPLETVTGAASSVTALVKNWDFDTKILHVSNVTGNFQIGEVIVGSASTLKYPGIGFTGSYVISAIDTSHDLDNEFIDIFSQNEEFEQAGDLIIDFQQTNPFGEYGNMGDRF
Physico‐chemical
properties
protein length:270 AA
molecular weight: 27825,66310 Da
isoelectric point:4,20503
aromaticity:0,09630
hydropathy:0,22889

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
WJZ48409.1
1 270
Domain Start End Length (AA) Confidence
N-terminal 1 148 148 0,7443
Central domain 149 259 112 0,4882
C-terminal 260 270 10 0,0892
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-148
Central
149-259
C-terminal
260-270

Taxonomy

  Name Taxonomy ID Lineage
Phage Synechococcus phage DSL-LC02
[NCBI] 		3058947 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Synechococcus sp.
[NCBI] 		1131 cellular organisms > Bacteria > Bacillati > Cyanobacteriota/Melainabacteria group > Cyanobacteriota > Cyanophyceae

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WJZ48409.1 [NCBI]
Genbank nucleotide accession
OR032571 [NCBI]
CDS location
range 158622 -> 159434
strand -
CDS
TTGACAGATATTTACATTAACAATGGTGGAATAAACTATACAAGTACTCCAATTATTGCTATCAGCACTTCTCCATCTGGAGGAAATGCAAGTGCAATTGGAATAATGTCAACCAGTGAAGGGACTGGAAAACTATATCTGAGCAATGTATTGATTACAAATCCTGGTTATGGATATACAGAAAATCCAACTGTAAGATTTATTGGTGGTGGTGGAACAGGAATTGCAGTAACAGTTGGAATTAGTACATTCAATTCTGTTGGAATTATTACAATTACTTCTGGTGGTACTAGATATGTAACCAATCCTACTGTAACTTTTGTTGGAAATGTTGGAACAGGGATGAGTGCAACAGCAAACGCATATGTTACCGCAGGAGTTGTAACATCCATCATTCTAACAAACGCAGGATTTGGTTACACAGTTGCTCCAACAATTGTGATTGGGCCGCCAGCTGGAGTTGGTACTGGAAACTTCACTCCTCTGGAAACAGTTACTGGAGCTGCAAGTTCTGTTACAGCTCTTGTCAAGAATTGGGACTTCGATACAAAAATTCTTCATGTATCAAATGTCACTGGCAATTTCCAGATTGGAGAAGTTATTGTTGGATCTGCAAGTACATTGAAGTATCCTGGAATTGGATTTACAGGATCTTATGTCATCTCCGCAATTGACACTTCACACGATCTTGATAATGAGTTTATAGATATATTCAGTCAGAATGAAGAATTTGAACAGGCTGGAGATTTAATCATAGATTTCCAACAAACAAATCCATTTGGAGAATATGGAAATATGGGAGATAGATTCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
3668a8185562ced85edfe34011f7489cad9891ef2002d013518a13ba142d8f5d
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6754
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50