Protein

View in Explore
Genbank accession
QBI82569.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MYSPRPYGRFAEDAELSADDAAAVERLARNLTNFKQASDLANLKRVAGLPSGRQAVAIDMGGVFRILVLEQHELPQFRFDGVAQTNIPMLFSGVITRAQVLTDGQGVGIRLTEQARRRLVAYDPKAALPPKDVALQRFVIKYEPRFQYFEPREQGIYTFTQYVKQRPTWYSGAMAEVMQVAGGYGRQVMAELPEDDLERARMLIPERYMHRIRQEVGNVRLPAYTGFPDEQGQFKCDYLASRCNAVAFDAGNSPWLLQINARGVYAMPLPVVPATTTEAFRDYVLDVGDDELLKLLDRFGGMPTGEGFPQPEQEFEAWRRAGVIVKVCDTADFYNFEAMYAACGWAVNSRGTEGFNTCWTYDDAGLMQVHAYKMSLSLAPAENQGRLKNTWNFDDPDDAAKLNAYLAQVYGALTDGTARELAIKYKIRRVPAGEILSRASSASGPDLDYWDSLELPPIATHQGRVSRVASGPFYWPSKVLKSCTRLKFPELTGQGCESFPHISPDYSGGAVKCDTIVFGCYVEDQLRVIKYFYDERKFQQETTSTFEQYMIVGQWEKTETFGLSGLMGFFYTTDFDDRQEQPAVTVHTNIVGTDMGYGNPAYSTPPTLWCVGGVSRSRYYMHRTTVDTTETFTLDVAALVPVFERDCMLYAYQDHTGGRSSHEETTQGSVPDPTSYELWCYDDIWHWMGQTRNGNRGDPPSKDGVPVYVDTLVYSPTEISDFAESGNWLNLPPGGFLDVTGICGPYTYRNSVHNANGVIIGGEAPGFDPYRKDTQYPNESSGRLSVCLSVAGAVQVNKDMPHSWYWGFSPENDFYFYRDAVHVAIGDARYASIYETGQDGLRRRWGHTALADHKAAHHFIGVINE
Physico‐chemical
properties
protein length:865 AA
molecular weight: 97018,67230 Da
isoelectric point:5,20437
aromaticity:0,12254
hydropathy:-0,39618

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QBI82569.1
1 865
Domain Start End Length (AA) Confidence
N-terminal 1 137 137 0,9794
Central domain 138 473 337 0,7423
C-terminal 474 865 391 0,4691
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-137
Central
138-473
C-terminal
474-865

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage vB_Pae_CF126a
[NCBI] 		2563544 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Pseudomonas aeruginosa
[NCBI] 		287 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Pseudomonadales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QBI82569.1 [NCBI]
Genbank nucleotide accession
MK511042 [NCBI]
CDS location
range 35984 -> 38581
strand -
CDS
ATGTATTCGCCGCGCCCCTACGGACGTTTCGCGGAAGACGCGGAGCTTTCCGCCGACGATGCCGCCGCTGTCGAGCGGCTGGCCAGGAACCTGACGAACTTCAAGCAGGCGTCTGACCTCGCCAACCTGAAGCGCGTTGCGGGCCTGCCCAGCGGCCGGCAGGCGGTGGCCATCGACATGGGCGGAGTGTTTCGCATCCTGGTGCTCGAGCAGCATGAGCTTCCGCAATTCCGTTTCGACGGGGTGGCACAGACCAACATCCCCATGCTGTTCTCCGGCGTCATCACCCGCGCCCAGGTGCTGACCGATGGGCAGGGCGTTGGCATAAGGTTGACCGAGCAGGCCCGGCGCCGGCTGGTGGCCTACGACCCGAAAGCGGCGCTTCCGCCGAAGGACGTGGCGTTGCAACGCTTCGTCATCAAGTACGAACCTCGTTTCCAATACTTCGAGCCGCGCGAGCAGGGCATCTACACATTCACTCAGTACGTCAAGCAGCGCCCGACCTGGTACAGCGGCGCCATGGCCGAGGTCATGCAGGTGGCTGGCGGATATGGGCGGCAGGTCATGGCCGAACTGCCAGAGGACGACCTTGAGCGCGCAAGGATGCTGATTCCTGAGCGCTACATGCACCGCATCCGCCAGGAAGTCGGCAACGTTCGGCTGCCGGCCTACACAGGCTTTCCGGACGAGCAAGGCCAGTTCAAATGTGACTACCTCGCCAGCCGCTGCAACGCCGTCGCTTTCGATGCCGGCAACAGTCCGTGGTTGCTGCAGATCAATGCGCGGGGCGTCTACGCGATGCCGCTTCCTGTGGTGCCGGCCACCACCACCGAGGCTTTCCGTGACTACGTGCTGGATGTTGGTGACGACGAGCTGCTGAAGCTTCTGGACCGCTTCGGCGGCATGCCTACTGGTGAGGGGTTCCCACAGCCGGAACAGGAGTTCGAGGCGTGGCGCCGGGCCGGCGTCATCGTCAAGGTCTGCGACACCGCCGACTTCTACAATTTCGAGGCCATGTACGCGGCGTGTGGCTGGGCGGTGAACAGCCGAGGCACCGAGGGCTTCAACACCTGCTGGACCTATGACGACGCCGGCCTGATGCAGGTCCATGCGTACAAGATGAGTCTGTCGCTGGCCCCGGCGGAGAACCAGGGGCGACTGAAGAACACCTGGAATTTCGATGATCCAGACGATGCAGCGAAACTCAACGCCTACCTGGCCCAGGTCTATGGCGCGCTGACCGATGGCACCGCCAGAGAACTGGCCATCAAGTATAAGATTCGGCGGGTGCCGGCTGGTGAGATTCTCTCGCGCGCCTCTTCGGCCAGCGGCCCGGATCTGGACTACTGGGACAGCCTGGAACTACCTCCCATCGCCACCCACCAGGGCCGAGTGTCGCGCGTCGCCAGTGGCCCTTTCTACTGGCCGTCCAAGGTCTTGAAGTCCTGCACCCGCCTGAAGTTCCCCGAACTGACGGGGCAGGGGTGCGAGTCCTTCCCGCACATCTCGCCCGACTATTCCGGCGGCGCAGTGAAGTGCGACACCATAGTCTTCGGCTGCTATGTCGAGGACCAATTGCGTGTCATCAAGTATTTCTACGACGAACGCAAGTTCCAGCAGGAAACGACAAGTACGTTCGAGCAGTACATGATCGTCGGCCAGTGGGAGAAGACCGAGACCTTCGGCCTCAGCGGGCTGATGGGGTTCTTCTACACGACCGACTTCGACGATCGGCAGGAGCAGCCGGCGGTAACGGTCCATACCAACATCGTCGGCACCGATATGGGCTACGGCAACCCGGCTTACTCCACTCCGCCGACGCTTTGGTGCGTCGGCGGCGTGAGCCGGTCCAGGTATTACATGCACCGCACCACGGTAGACACTACCGAGACGTTTACCCTGGACGTGGCGGCGCTGGTGCCGGTGTTCGAGCGCGATTGCATGCTCTACGCCTACCAGGACCATACCGGGGGACGCAGTTCCCACGAGGAAACGACGCAGGGCTCTGTGCCTGATCCCACGTCCTACGAACTCTGGTGCTACGACGACATCTGGCACTGGATGGGGCAGACGCGGAACGGGAACCGGGGCGACCCGCCATCCAAGGATGGGGTGCCTGTCTATGTCGACACGCTGGTCTACAGCCCCACCGAAATCAGCGACTTCGCCGAGAGTGGCAACTGGCTGAACCTGCCACCTGGCGGGTTTCTGGATGTCACGGGCATCTGTGGGCCGTACACCTACCGCAACTCCGTCCACAACGCCAACGGCGTCATCATCGGCGGCGAGGCGCCAGGCTTCGATCCGTACCGGAAGGACACCCAGTACCCCAACGAGAGTAGCGGGCGCCTGAGTGTGTGCCTGTCCGTGGCCGGCGCTGTTCAGGTCAACAAGGACATGCCGCACTCGTGGTACTGGGGCTTCTCGCCCGAGAACGACTTTTACTTCTACCGCGACGCCGTGCATGTCGCCATCGGCGACGCCCGGTACGCCAGCATCTACGAGACGGGCCAGGATGGACTGCGCCGCCGCTGGGGGCATACCGCACTTGCCGATCACAAGGCGGCCCACCACTTCATAGGGGTTATCAATGAGTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
ceca52b45c642249f527d36c7ce572678d57c9576d16b3beda28bb59ca66fae9
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,2952
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Mobilizing temperate bacteriophage communities and resolving individual phage genomes from cystic fibrosis and bronchiectasis Pseudomonas aeruginosa isolates Tariq,M.A., Everest,F.L.C., Cowley,L.A., Wright,R., Holt,G.S., Ingram,H., Duignan,L.A.M., Lanyon,C.V., Perry,A., Perry,J.D., Bourke,S., Brockhurst,M.A., Bridge,S.H., Soyza,A.D. and Smith,D.L. 2019 — GenBank