Protein

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Genbank accession
YP_010739092.1 [GenBank]
Protein name
fibronectin type III domain protein
RBP type
TSP
Evidence RBPdetect
Probability 0,82
Protein sequence
MADLGAIGASYAVGSLSALGRPPMVSPYLGPARSPTNMPGWRVQYATQFYGGPQSQPGTPLWYGPPRTIGTDPMALYGVGGTVKQRLNGVDSPLVGCLVRLYARRSGTIAGTAISGVDGSFQIDNLLPDIAGFFAIAFDPEGDPVQNAVIFDRLKALPLVPGEIKDLEISFSTASQASYRLSTVYIEGVVTYAVTSGALPDGIVLNTSTGAITGKALSGGAYSFTVTAVGSVYGSGFRTWSGEVSEGLEYLNTLQGTSGLTLVRSGQADEGYIVLPALPFDFNLFGTNYKNNIYVCANSFITFGFGVSVYSGLSATNPGRGLLLAAADRSWSVLYAGSVLSGQGFLVRFDGSTSYTSYDGGNLWEVTFYVDGTIGLVTGNFPSGGVTNISDGTSWRSEGPAPVFQPNKAYLGTPTGTNGNYVWQENP
Physico‐chemical
properties
protein length:427 AA
molecular weight: 44685,51390 Da
isoelectric point:4,72601
aromaticity:0,11710
hydropathy:0,07518

Domains

Domains [InterPro]
DC_0374
STR
1–160
DC_0374 IPR013783 DC_0792
DC_2153
STR
153–248
DC_2153
IPR015919
STR
156–232
IPR015919
PF05345
RBD
176–229
PF05345
YP_010739092.1
1 427
Architecture
STR
RBD
STR 1-248 | RBD 249-427
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_010739092.1
1 427
Domain Start End Length (AA) Confidence
N-terminal 1 375 375 0,7593
Central domain 376 416 42 0,9072
C-terminal 417 427 10 0,6578
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-375
Central
376-416
C-terminal
417-427

Taxonomy

  Name Taxonomy ID Lineage
Phage Xanthomonas phage vB_Xar_IVIA-DoCa6
[NCBI] 		2975533 Uroviricota > Caudoviricetes > Mesyanzhinovviridae > Bosavirus > Bosavirus Doca6
Host Xanthomonas arboricola pv. juglandis
[NCBI] 		195709 Pseudomonadota > Gammaproteobacteria > Lysobacterales > Lysobacteraceae > Xanthomonas > Xanthomonas arboricola

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010739092.1 [NCBI]
Genbank nucleotide accession
NC_073035 [NCBI]
CDS location
range 36761 -> 38044
strand +
CDS
GTGGCCGACCTTGGCGCCATCGGCGCGTCCTACGCGGTAGGCAGCCTGAGCGCCCTGGGGCGGCCTCCCATGGTCTCGCCCTACCTGGGCCCGGCCCGCAGTCCTACCAACATGCCCGGGTGGCGGGTGCAGTACGCCACCCAGTTCTACGGCGGCCCGCAGTCGCAGCCCGGCACGCCGCTCTGGTACGGCCCGCCCAGGACGATCGGCACCGACCCGATGGCGCTGTACGGCGTCGGCGGCACGGTCAAGCAGCGGCTGAACGGCGTGGATAGCCCACTGGTCGGCTGCCTGGTCCGCCTGTACGCCAGGCGGTCGGGCACCATCGCAGGCACGGCCATATCGGGCGTCGACGGCTCGTTCCAGATAGACAACCTGCTGCCCGACATAGCAGGCTTCTTCGCCATCGCCTTTGACCCGGAGGGCGACCCGGTGCAGAACGCGGTCATCTTCGACAGGCTGAAGGCCCTGCCGTTGGTGCCCGGCGAGATCAAGGACCTCGAGATCTCGTTCAGCACAGCCTCCCAGGCGTCCTACCGCCTGTCAACGGTGTACATAGAGGGCGTCGTAACCTACGCGGTCACCTCGGGAGCTCTGCCGGACGGGATCGTGCTGAACACGTCCACGGGCGCCATCACCGGCAAGGCCCTGTCTGGCGGCGCGTACTCCTTCACCGTCACGGCGGTGGGCTCGGTGTACGGGTCGGGCTTCAGGACCTGGTCTGGCGAGGTGTCTGAAGGCCTGGAGTACCTCAACACCCTGCAGGGCACCTCGGGCTTGACGCTGGTGAGATCGGGCCAGGCAGACGAGGGGTATATCGTGCTCCCAGCCCTGCCTTTCGACTTCAACCTGTTTGGCACCAACTACAAGAACAACATCTACGTCTGCGCCAACAGTTTCATCACCTTCGGCTTCGGCGTCTCGGTCTACTCGGGCCTGTCGGCCACCAACCCGGGGCGCGGCCTGTTGCTGGCCGCCGCCGACCGATCGTGGTCGGTGCTGTACGCCGGGTCCGTGCTGTCGGGGCAGGGCTTCCTGGTGCGGTTCGACGGCTCGACAAGCTACACCAGCTACGACGGCGGCAACCTGTGGGAGGTCACGTTCTACGTGGACGGCACCATTGGCCTGGTGACAGGCAACTTCCCGTCCGGGGGCGTGACCAACATATCCGACGGCACGAGCTGGCGTAGCGAGGGCCCGGCCCCGGTGTTCCAGCCGAACAAGGCGTACCTGGGCACCCCGACCGGCACCAACGGCAACTACGTCTGGCAGGAGAACCCGTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
bd5e42821d606ae2241347346eed47eac382742aa898896bd26b383947a08da3
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6840
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Comparative analysis of new lytic phages for the biological control of phytopathogenic Xanthomonas spp. Domingo-Calap,M.L., Bernabeu-Gimeno,M., Aure,C.M., Marco-Noales,E. and Domingo-Calap,P. 2022-12-21 — GenBank