Protein

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Genbank accession
AFI55335.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence RBPdetect
Probability 0,56
Protein sequence
MALFTMLNVVSSRTDLTKIDYKDVEFFSGVEGDSKYHWILGISNTALSSRINYLDKLTVGTIAPTWTFNGVITDAYESGLITPVTDDSQVLLLTEVISFKVNEFGGVGIINGNMSSTTSSSGGGSVYLSNDFHLYLIYHGIVSNVKITTEELIVGQEYTLIIHRDWNSTNKETTVLLDGEVIFDNVSTSTYITTDRKLGLGNCYYNTGNTPEIEFSEMVVFNKQFDAEGLALLNAKAKSRINSRT
Physico‐chemical
properties
protein length:245 AA
molecular weight: 27040,06170 Da
isoelectric point:4,73653
aromaticity:0,10204
hydropathy:-0,02204

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AFI55335.1
1 245
Domain Start End Length (AA) Confidence
N-terminal 1 29 29 0,9606
Central domain 30 228 200 0,0182
C-terminal 229 245 16 0,9904
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-29
Central
30-228
C-terminal
229-245

Taxonomy

  Name Taxonomy ID Lineage
Phage Halocynthia phage JM-2012
[NCBI] 		1173297 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Halocynthia roretzi
[NCBI] 		7729 Eukaryota > Metazoa > Chordata > Tunicata > Ascidiacea > Stolidobranchia

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AFI55335.1 [NCBI]
Genbank nucleotide accession
JQ340088 [NCBI]
CDS location
range 50249 -> 50986
strand -
CDS
ATGGCATTATTTACAATGTTAAATGTAGTTAGTTCTAGAACGGACTTAACTAAAATAGATTACAAAGATGTAGAATTCTTTTCTGGAGTTGAAGGAGATTCTAAATATCATTGGATATTAGGTATATCAAACACAGCACTTAGTAGTCGTATAAACTACCTAGATAAATTAACGGTAGGTACTATAGCTCCGACATGGACATTTAATGGAGTTATAACAGACGCATATGAATCTGGCCTTATAACACCAGTAACCGATGATAGTCAAGTCTTACTATTGACTGAGGTTATTAGTTTTAAAGTTAATGAGTTTGGTGGGGTCGGTATTATCAATGGTAATATGTCGTCTACAACAAGTTCATCTGGCGGTGGTAGTGTATACTTAAGTAATGATTTCCATCTGTACCTAATATATCACGGTATAGTTTCTAATGTTAAAATCACTACCGAAGAACTTATCGTAGGTCAGGAGTATACGTTAATTATTCATCGTGATTGGAATAGTACTAATAAAGAAACCACTGTATTGTTAGACGGTGAAGTTATATTTGACAACGTTAGTACTAGTACGTATATCACCACTGATAGAAAGTTAGGTTTAGGTAATTGCTATTATAACACAGGTAATACTCCAGAAATCGAGTTTTCAGAAATGGTTGTTTTTAATAAACAATTCGATGCTGAGGGATTGGCTTTATTAAACGCTAAAGCTAAATCAAGAATTAACTCAAGAACTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
f34e7cde9c85be6110488b44ba81765f8c2f2acf6f6d636ce5af5ad04c940abd
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8296
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Bacteriophage from diseased seasquirt, Halocynthia roretzi, showing soft tunic syndrome Mun,J.Y., Jang,H.N., Ha,M.A., Nho,S.W., Cha,I.S., Park,S.B., del Castillo,C.S., Jung,C.Y., Kim,Y.K., Kim,Y.R., Aoki,T.T. and Jung,T.S. 1982-05 — GenBank