Protein

View in Explore
Genbank accession
ATN93408.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,61
TF
Evidence RBPdetect2
Probability 0,91
Protein sequence
MAINPALRFGSRIDNTDPNMPFGKPINRSGGISGTGTPLTSEWVQDLWGFSQALMVSAGMTPDNTFDEVGDSQVEDAIRIAIAKQVAISGGLVQLQDGNWGSGKQFTLAKHFLVTRDARIYTPVAGVSLPVTSGVNPDTNFAEWKIDPDQVPVSKTDFDNLVLNFTALQNQVNLNVTDILNNFNGQATVNADFEQRISDVEALALDNFRVTTNPTIEVNAAKVQRLDLPTLVNNVTFTDLPTYSGRSYTLTLIVRQKGGGQAINWPSNIRWHNGITPVLGNLDGMEDIFQFIFVGSNSWPYAIHTPLHNLGGSGGGGGSLAQLQAQVNRIEDDIEFASNNMSKYVTDTGLAAFNYQTAAMVDTAITARGYKDEAELDTWLATKNFLTDTAIDTLITGKGYLTTGQVDARIDANATVAASKTVTDDVTTNDTIQKANDAALWVADANTAIDTRIASNSTVAGNKNITDNITANDTITKANDAKTWIDNADANIQTVIDAHHETELTNLRHIVKTTADLFPLENNTIVFSQMGKHASGSLVQDGLSTHPTDQALIVGSKEGGDGASNTSYPVLNLFGTDVILNHAGVGNFTRANVIVLPDAEDGTTIYNEVTDTISVATDTTTAFNGLLSNGDFSKGDDGIGWLGYGSDWTITTNGASSNGASDNNRLRSEDILLPDTTYTIEIDIEVESGDPSLELYEGTYVVLQEYLQSGTYKHTFTTAANNNGRIYVQTDTGDVCHVRAIRLYQEKTKVVTERQDLVFLETWVEDITTKDWFCPYGNVQSNVSNVNGVAAITAEFAVLNGFVAFDYGYLKYGDWEEDADARQRTGIVWSSLTQEDKIKLAMMPENNLYYDPITGQWLQLRYRWRVVKGEGNDWRDENILPYKGNSNDFQYSNTKNIAPQGSLDVSTPFGTGGVKYSADPEMTGAFKADITQAYGVDGHCYAIPLALVQRLNKGGFHPFYNPFGTAKMFNTNGAVGEWYESWANTTLDQPRTKSHCFDARADLAGTGSFATTISGNGKFHDLLYPELVKDLRSATRRRSPENDSKRILEVVKGNVRGWGEIPYTWSLRARANTSGDTIKLSDVRPLFWKDYWPSTNLEISVSSISHNLTVNINGTTFYIVTVGFDGEYYIKVSDVPRGTPVTSGAVVGTRFSVTFLGQHSPIDFRADTWTISDLVGTATQNMVTAPLGWAGTVVKEVPDGSTKDFFLTHKTASATRYRTSDGLVYTKSTPTVSNNTVNIAGLTTESNVCLYETKLATFGVSQVKELAGDYKIFDTTSTNLLTRMVLTGDETNLLSGSIPVNSFLFLDTNKTIKYNGIDEAPLNDSDKTVVVAYVTEDNGLPYIQIVGKTLSYDSTQFDPWGDNYEIPVVNNYSVILDGNNTPQLNFCLQTKVPLDI
Physico‐chemical
properties
protein length:1396 AA
molecular weight: 152455,35130 Da
isoelectric point:4,66133
aromaticity:0,09384
hydropathy:-0,28797

Domains

Domains [InterPro]
DC_1864
STR
54–304
DC_1864 DC_1387
Coil
Unmapped
320–340
Coil
ATN93408.1
1 1396
Architecture
STR
STR
STR 54-304 | STR 316-1396
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
ATN93408.1
1 1396
Domain Start End Length (AA) Confidence
N-terminal 1 759 759 0,8219
Central domain 760 1131 373 0,9010
C-terminal 1132 1396 264 0,2292
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-759
Central
760-1131
C-terminal
1132-1396

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudoalteromonas phage J2-1_QLiu-2017
[NCBI] 		3117586 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Pseudoalteromonas phenolica
[NCBI] 		161398 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Alteromonadales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
ATN93408.1 [NCBI]
Genbank nucleotide accession
MF988720.1 [NCBI]
CDS location
range 31542 -> 35732
strand +
CDS
ATGGCAATTAATCCAGCTTTAAGGTTTGGTAGTCGAATAGACAACACTGACCCTAATATGCCTTTTGGTAAACCTATTAACCGTTCTGGAGGTATCTCTGGGACAGGTACACCACTAACTTCTGAGTGGGTACAAGACTTATGGGGCTTCTCTCAAGCCCTTATGGTCAGTGCTGGTATGACACCAGACAATACTTTTGATGAGGTAGGAGACTCTCAAGTAGAAGATGCTATCAGAATTGCCATTGCTAAACAGGTCGCTATCTCAGGTGGCCTTGTTCAGCTTCAAGATGGTAACTGGGGTAGCGGTAAGCAATTCACATTAGCTAAACACTTCTTAGTGACTCGTGATGCAAGAATATACACACCTGTAGCAGGTGTTTCTCTTCCTGTAACTTCTGGTGTTAATCCTGATACAAACTTTGCAGAATGGAAAATAGATCCAGACCAAGTACCTGTTAGTAAGACAGATTTTGATAACTTAGTTCTTAACTTTACAGCCCTTCAAAACCAAGTAAACCTAAATGTAACAGATATATTAAACAACTTCAACGGACAAGCTACTGTAAATGCCGACTTCGAACAACGTATCTCGGATGTAGAAGCACTAGCTCTAGATAACTTTAGAGTAACTACAAACCCAACAATAGAAGTTAATGCTGCTAAGGTACAAAGACTAGATCTACCAACTTTAGTGAACAACGTAACCTTCACTGATCTACCTACATACTCAGGCCGTTCTTATACTCTAACATTGATTGTTAGACAGAAGGGAGGAGGGCAAGCTATAAACTGGCCTAGCAATATTCGCTGGCACAATGGCATAACCCCTGTTCTTGGTAACTTGGATGGTATGGAAGATATTTTCCAATTTATCTTTGTAGGTTCTAATTCTTGGCCTTATGCAATCCACACACCATTACACAACCTTGGTGGTAGTGGGGGTGGTGGTGGTTCACTAGCACAACTACAAGCACAAGTAAACAGAATAGAAGATGACATTGAGTTTGCTTCTAATAATATGTCTAAGTACGTTACGGACACAGGACTTGCAGCATTTAACTACCAAACCGCAGCAATGGTAGACACTGCAATCACAGCTAGAGGTTATAAAGACGAAGCAGAACTAGATACTTGGTTAGCAACTAAAAACTTCTTGACAGATACCGCGATAGACACGTTGATTACTGGTAAAGGGTATTTGACAACAGGACAAGTAGATGCAAGAATAGACGCTAATGCAACGGTAGCAGCAAGTAAAACAGTAACTGATGATGTAACAACAAACGACACCATACAAAAAGCTAATGATGCAGCTCTTTGGGTTGCTGATGCAAACACCGCTATAGATACTCGTATAGCTTCTAACAGCACCGTAGCTGGTAATAAAAACATCACAGACAACATCACAGCAAACGATACTATCACCAAAGCAAACGATGCAAAAACTTGGATAGACAACGCAGACGCAAATATCCAAACAGTTATTGATGCACATCACGAAACCGAGCTAACAAACTTAAGGCATATTGTTAAAACAACTGCGGATCTATTCCCACTAGAGAACAACACGATAGTATTTTCTCAAATGGGTAAACACGCCAGTGGTAGTTTAGTACAAGATGGATTAAGTACACACCCTACAGACCAAGCTTTAATAGTTGGCTCTAAAGAAGGAGGGGATGGTGCAAGCAATACGAGTTACCCTGTCTTGAATTTGTTTGGAACAGATGTTATCCTAAACCACGCAGGGGTAGGTAACTTTACAAGAGCAAATGTGATTGTCCTTCCTGATGCAGAAGACGGAACTACAATTTACAATGAAGTAACCGATACGATTAGTGTTGCAACAGACACTACCACTGCATTCAACGGACTGTTGTCAAACGGAGATTTCTCTAAGGGTGATGATGGAATTGGTTGGTTAGGTTACGGAAGTGATTGGACAATAACAACTAACGGTGCGAGTTCTAATGGTGCTAGTGATAATAACAGGCTTCGTTCAGAAGACATACTATTACCAGACACCACTTATACTATAGAGATAGATATTGAGGTAGAATCTGGTGACCCTTCTTTAGAGTTGTACGAAGGTACTTATGTGGTTTTACAAGAATACCTACAGAGTGGTACTTACAAACACACTTTCACTACAGCAGCTAATAACAACGGACGTATTTACGTACAAACCGATACGGGGGATGTTTGCCACGTTAGAGCAATAAGGTTGTACCAAGAGAAAACCAAAGTGGTTACTGAAAGACAAGACCTTGTTTTCTTAGAGACTTGGGTAGAAGATATCACCACTAAAGATTGGTTCTGTCCTTACGGTAACGTACAATCTAATGTATCTAATGTTAATGGGGTAGCAGCCATTACAGCAGAGTTTGCAGTCCTCAACGGTTTTGTAGCTTTCGATTATGGATACTTGAAGTATGGTGATTGGGAAGAGGATGCAGATGCAAGACAAAGAACAGGTATTGTTTGGTCTTCTTTGACACAAGAGGATAAAATAAAACTTGCAATGATGCCAGAAAACAACTTATACTATGACCCTATAACAGGGCAGTGGTTACAATTACGTTACCGTTGGAGAGTGGTAAAAGGTGAAGGTAATGATTGGAGAGATGAGAATATACTTCCTTATAAAGGAAACTCTAATGACTTCCAATATTCAAATACCAAGAACATCGCACCTCAAGGTAGTTTAGATGTAAGCACTCCTTTTGGAACTGGTGGTGTGAAGTATAGTGCCGACCCAGAAATGACAGGTGCATTTAAGGCTGATATCACACAAGCTTATGGTGTGGATGGTCATTGTTATGCAATACCTCTTGCTCTAGTTCAGAGACTGAATAAAGGTGGTTTCCACCCATTCTATAACCCATTTGGTACAGCTAAGATGTTCAATACAAATGGTGCGGTAGGTGAGTGGTATGAATCTTGGGCCAATACTACCTTAGATCAACCTAGAACTAAAAGCCATTGTTTTGATGCAAGGGCCGACCTAGCAGGTACAGGTAGTTTTGCAACTACAATTAGTGGTAATGGTAAGTTCCACGACCTACTTTATCCAGAACTAGTGAAGGACTTGCGTTCAGCAACTAGACGTAGAAGCCCAGAGAACGATTCTAAGCGTATCTTAGAAGTTGTTAAGGGGAATGTTAGGGGTTGGGGAGAAATCCCTTATACGTGGTCATTAAGAGCACGAGCTAACACTTCTGGAGACACCATTAAACTAAGTGATGTCAGACCTTTATTCTGGAAAGATTACTGGCCTAGCACAAACTTAGAAATAAGTGTTTCTAGTATAAGCCATAACCTAACTGTTAACATAAACGGAACTACCTTCTATATTGTTACTGTTGGTTTTGATGGTGAGTACTACATTAAAGTATCTGATGTTCCACGTGGAACACCTGTTACCTCAGGTGCAGTAGTAGGAACTCGTTTTAGTGTTACTTTCTTAGGACAACATAGCCCTATAGATTTCAGAGCAGATACTTGGACTATTTCTGATTTGGTTGGTACAGCGACACAAAATATGGTAACAGCTCCTCTAGGTTGGGCAGGTACTGTTGTTAAAGAAGTTCCAGATGGTAGTACTAAGGATTTCTTCTTGACACACAAAACTGCCAGTGCCACAAGATACAGAACCTCAGATGGACTTGTCTACACAAAGAGCACCCCAACTGTAAGTAATAACACAGTCAATATTGCAGGGTTGACAACAGAAAGTAATGTATGTTTGTATGAAACCAAGCTTGCAACTTTCGGTGTATCCCAAGTGAAAGAGCTTGCAGGAGATTATAAGATCTTCGACACAACAAGCACTAATCTACTTACTAGGATGGTACTTACTGGAGATGAAACAAACCTACTTTCGGGCAGTATTCCAGTAAATAGTTTTTTATTCCTTGATACAAACAAAACTATCAAGTATAATGGTATAGATGAAGCACCTTTGAACGACAGTGATAAGACTGTTGTGGTTGCTTATGTAACAGAAGATAATGGATTACCTTACATACAAATTGTAGGAAAAACTTTATCATATGATAGTACTCAGTTTGATCCTTGGGGTGACAACTACGAAATACCTGTAGTTAATAACTACTCTGTTATCTTAGATGGTAACAACACTCCTCAATTAAACTTCTGTTTACAAACAAAAGTTCCCCTAGATATCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
9db8e08f45f2c184fb4ed12211f055dfc0d8b4cb047cc5109b327382331a2961
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,3865
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete Genomic Sequence of BacteriophageJ2-1: A Novel Pseudoalteromonas phenolica Phage Isolated from the Coastal Water of Qingdao, China Liu,Q. 2018-06 — GenBank