Protein

View in Explore
Genbank accession
AUS01811.1 [GenBank]
Protein name
pectin lyase fold/virulence factor
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MSQTIKLKTSSTPASVPSTGDLILGELAVNTHDGKLYFKKNDGSESIKVIDPDKVAPVQSVYGRTGDVIANVNDYAAFYLQDLTSESISDLADVSTSLLQTGDYLSWNGSGFENKPFKDYVGMEVGVLTQFQADGVDDMLDGKTVGTTVDHEVGQVWSSGQSAWRVDSVSAPMTIADFTLLSHMYLGDTGVANGNPDNLTLLTTYNAVAVAAKKRTILPIGTTDISAEWKVIDGSYITAVSTTDSILTLTDSASKEQNVITNEQNVRSTANTGNSNIVIEGFVIDGNYTRITPPYTGVESTGGCGIGFAFVRNARVSNMRIYDCNKHGIDINAKLYNSSSTGDPESYQDGESRHILIEFCDVSGCGDDQITTHFCRDVTIAWCYTHDTGDFYSVGNSNGFEIDDGSSDVKIFGGFAINCSRGVQVKGHDYAPAASDIKIIGLTCENNGQNFVLLHAGFDEGTRSRSAFDVRITDCTSIVPRKKNAETRARRHLSIQSYDNVNITNFTCIGTYTLVPATDPSNTSDRGGDHAIVMFGGARNIQFTGLTIRGEVDYTTCIQLNNTCEDVTFFNTILYQCTGDGFVVESGTEGVRVNRVRARTNRTPTPEYVFRSVNSPTALNYSVEDVRYSGYSYAYRLATAQYVDPIKLDNLDNGNIMIRNLPTTDPSVTGQLWNDGGTIKIS
Physico‐chemical
properties
protein length:682 AA
molecular weight: 74002,08290 Da
isoelectric point:4,74795
aromaticity:0,08651
hydropathy:-0,27639

Domains

Domains [InterPro]
DC_2291
ATT
1–163
DC_2291 IPR012334
IPR012334
STR
206–650
IPR012334
IPR011050
STR
272–456
IPR011050 IPR006626 IPR006626 IPR006626
IPR006626
Unmapped
274–302
IPR006626 IPR006626 IPR006626 IPR006626 IPR011050
AUS01811.1
1 682
Architecture
ATT
STR
ATT 1-163 | STR 195-663 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AUS01811.1
1 682
Domain Start End Length (AA) Confidence
N-terminal 1 194 194 0,9793
Central domain 195 649 456 0,9836
C-terminal 650 682 32 0,9125
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-194
Central
195-649
C-terminal
650-682

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage 1.293.O._10N.261.52.E1
[NCBI] 		1881284 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Vibrio cyclitrophicus
[NCBI] 		47951 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AUS01811.1 [NCBI]
Genbank nucleotide accession
MG592660 [NCBI]
CDS location
range 21492 -> 23540
strand +
CDS
ATGTCACAAACAATTAAGTTGAAAACATCCAGTACACCTGCATCGGTGCCCTCTACGGGTGACTTGATTCTAGGTGAATTGGCTGTTAATACTCATGACGGGAAGTTGTACTTTAAGAAGAACGACGGCTCGGAATCAATTAAGGTCATTGACCCTGACAAGGTAGCTCCTGTTCAGTCGGTGTATGGCCGAACTGGCGATGTTATCGCTAACGTAAATGACTACGCAGCCTTCTACTTACAAGACCTAACCTCTGAGAGCATTTCGGACTTAGCAGATGTAAGCACTTCGTTGCTACAAACAGGTGACTACCTATCTTGGAATGGTTCTGGTTTTGAGAATAAACCGTTTAAGGACTATGTTGGAATGGAAGTGGGCGTACTCACTCAGTTTCAAGCAGATGGTGTGGATGACATGTTGGATGGTAAAACGGTAGGTACTACTGTGGACCACGAGGTAGGCCAAGTATGGTCTTCTGGTCAATCAGCATGGCGTGTAGATTCAGTAAGCGCTCCTATGACAATTGCAGACTTTACGTTGCTATCTCATATGTATCTAGGGGACACTGGTGTTGCTAATGGTAATCCAGACAACCTTACATTGCTGACTACGTACAATGCTGTAGCTGTAGCTGCTAAGAAGCGTACTATCTTACCAATCGGTACTACTGATATCTCTGCGGAGTGGAAGGTAATAGATGGTTCGTACATCACTGCAGTATCTACTACGGATTCAATCCTGACGTTGACTGACTCTGCTTCTAAGGAACAGAACGTTATCACCAACGAACAGAACGTCCGTTCAACAGCTAACACTGGTAACTCGAACATTGTCATTGAAGGTTTTGTTATTGATGGCAACTACACACGTATTACCCCACCGTACACAGGTGTGGAATCGACAGGTGGTTGTGGTATCGGCTTCGCATTCGTACGTAATGCTCGTGTTTCTAACATGCGTATCTATGACTGTAACAAGCACGGTATCGACATCAATGCTAAGTTGTACAACAGCAGCTCTACAGGCGACCCTGAGAGTTATCAAGATGGTGAATCTCGTCATATCCTGATTGAGTTCTGTGATGTTTCGGGTTGTGGTGATGACCAAATTACGACTCACTTCTGTCGTGATGTTACTATCGCTTGGTGTTACACACATGATACTGGAGATTTCTACTCGGTAGGTAACTCTAACGGTTTCGAGATTGATGATGGTTCTTCTGATGTGAAGATTTTCGGTGGGTTTGCTATTAACTGTTCACGAGGTGTTCAAGTTAAAGGTCACGATTATGCTCCGGCTGCTAGTGACATCAAAATCATTGGATTGACTTGTGAGAACAACGGTCAGAACTTCGTGTTACTACATGCGGGATTTGATGAGGGTACACGTTCTCGTAGTGCATTTGATGTGCGAATCACGGACTGTACCTCTATTGTTCCTCGTAAGAAGAACGCAGAGACACGAGCTCGTAGACACTTGAGCATTCAATCGTACGACAACGTTAATATTACTAACTTCACTTGTATCGGTACATATACGCTAGTACCTGCAACTGACCCAAGTAACACTTCGGACAGAGGCGGAGACCACGCTATTGTGATGTTTGGTGGAGCACGTAATATTCAGTTTACAGGTTTGACTATTCGAGGTGAGGTGGATTACACCACTTGTATCCAGTTGAACAACACCTGTGAGGATGTGACGTTCTTCAATACAATCTTGTATCAATGTACAGGTGATGGTTTCGTAGTGGAATCAGGTACTGAGGGTGTTCGTGTTAACCGTGTGAGAGCACGTACTAACCGTACTCCTACTCCTGAATATGTTTTCCGTTCGGTTAACTCTCCTACAGCCCTTAACTACTCGGTTGAGGATGTGAGATATTCTGGTTACAGCTATGCATACCGACTTGCTACGGCACAGTATGTAGACCCAATCAAGCTAGATAACCTAGATAACGGTAACATCATGATTCGTAACCTGCCAACTACTGACCCTTCAGTTACCGGCCAGTTATGGAATGATGGAGGTACAATTAAGATTTCTTAG

Genome Context

Genome Context

Tertiary structure

PDB ID
c4909d81d4df23af11a63bc811904df3bed114bb3d600306df004e89591f59c3
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7361
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
A major lineage of nontailed dsDNA viruses as unrecognized killers of marine bacteria Kauffman,K.M., Hussain,F.A., Yang,J., Arevalo,P., Brown,J.M., Chang,W.K., VanInsberghe,D., Elsherbini,J., Cutler,M.B., Kelly,L. and Polz,M.F. 2018-01-24 — GenBank