Protein

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Genbank accession
WNY35841.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence RBPdetect
Probability 0,70
Protein sequence
MTPNDKCKKEFRFDQNRRDLMKIGGLIMATPLIALIPITSASASDDFFNGGESISVLGDSISHGAYAIDIYTNGWVKLLGRSLNAEYGTYSYGYTPYLTIGKGDLSSKDIHSINFKGQWTGLNNELATDSVSGLGFKSNNEGDTISITIPTSFINRALIHYRTQENGATFDVFVDGVLVDYVSSSGKINSFNSYELIIPSSNKTVTISVVLKESKPFIFEGISYLSPYKERVCNNYSQSGRRLRYVGEDVIKTVCENSHTVVMALGHNDHGETDPAYQSEVSSKIDLFIQYANQHKVRVVVPDFCWGADSSNWMRVLLKKLASDTGGIYVDLPSMLTKEDGSPADSNHLINTLGMWVDGSHPNIKGNKWIFETVAKEMGLSCSSKEEALTLYDYNLPSEKETITKSGGSLSTLTLLGLTSLFFRKNS
Physico‐chemical
properties
protein length:427 AA
molecular weight: 47073,48380 Da
isoelectric point:5,76480
aromaticity:0,09836
hydropathy:-0,24005

Domains

Domains [InterPro]
SSF52266
STR
54–393
SSF52266
IPR036514
STR
222–384
IPR036514
WNY35841.1
1 427
Architecture
STR
STR 54-393 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
WNY35841.1
1 427
Domain Start End Length (AA) Confidence
N-terminal 1 41 41 0,4773
Central domain 42 240 200 0,3854
C-terminal 241 427 186 0,6724
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-41
Central
42-240
C-terminal
241-427

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage Vb_VaM_Valp1
[NCBI] 		3076796 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Vibrio anguillarum
[NCBI] 		55601 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WNY35841.1 [NCBI]
Genbank nucleotide accession
OR500391 [NCBI]
CDS location
range 21673 -> 22956
strand +
CDS
ATGACACCAAATGATAAGTGTAAGAAAGAATTTAGATTTGACCAAAACAGAAGAGACTTAATGAAAATTGGTGGTTTAATCATGGCCACTCCATTAATTGCACTTATACCTATAACTTCAGCATCCGCAAGTGATGATTTTTTTAACGGCGGTGAGTCAATATCTGTTCTAGGAGACTCTATAAGCCACGGTGCTTATGCTATAGATATTTATACTAACGGGTGGGTTAAGCTTCTTGGTCGATCACTCAATGCTGAATATGGGACATATTCTTATGGATATACGCCCTACTTAACAATAGGAAAAGGGGATTTATCCAGCAAAGATATACACAGCATTAACTTTAAAGGTCAATGGACAGGGCTAAACAATGAATTGGCTACTGACTCTGTGTCTGGACTTGGTTTTAAATCAAATAATGAAGGAGATACAATTTCCATAACCATACCAACATCATTCATAAATCGAGCTTTAATCCATTACAGAACTCAAGAGAACGGGGCGACATTTGACGTTTTTGTTGATGGGGTGTTGGTTGATTATGTAAGTAGCTCTGGAAAAATTAATTCTTTTAATAGTTATGAACTGATAATTCCTTCAAGCAATAAAACTGTAACAATAAGCGTCGTTTTAAAAGAAAGTAAACCATTTATCTTTGAAGGCATAAGCTACTTATCCCCTTATAAGGAAAGAGTCTGCAATAACTACAGCCAATCGGGTAGGCGACTTCGTTACGTTGGTGAAGATGTTATTAAAACGGTTTGCGAAAACTCTCATACTGTCGTTATGGCACTTGGTCATAATGACCATGGAGAAACAGACCCAGCCTATCAAAGTGAAGTTTCCAGTAAAATTGACTTATTTATTCAATACGCCAATCAACATAAGGTAAGAGTTGTCGTCCCTGACTTTTGCTGGGGAGCTGATAGCTCAAATTGGATGAGAGTCTTATTGAAGAAGCTAGCTAGTGATACTGGTGGGATATATGTAGATTTACCATCAATGCTAACCAAAGAAGATGGCAGCCCTGCAGACAGCAATCATTTAATCAACACACTTGGTATGTGGGTAGATGGTAGTCACCCAAATATTAAAGGTAACAAATGGATATTTGAAACAGTAGCAAAAGAAATGGGGTTAAGTTGCTCTTCTAAAGAGGAAGCATTAACCCTTTATGATTACAACTTACCCAGCGAAAAAGAAACGATAACAAAAAGCGGTGGTTCGTTATCTACACTTACACTATTAGGATTAACTAGTTTATTTTTTAGAAAAAACAGTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
2617002a217944bf857c11408748047b70e2e2abe2c1bacbe507aa1716a8643b
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8028
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Valp1, a Newly Identified Temperate Phage Facilitating Coexistence of Lysogenic and Non-Lysogenic Populations of Vibrio anguillarum Arce,M., Venegas,G., Paez,K., Latz,S., Navarrete,P., Caruffo,M., Feijoo,C., Garcia,K. and Bastias,R. 2024 38668240 GenBank