Protein

View in Explore

Genbank accession

AFD02935.1 [GenBank]

Protein name

YadA domain structural protein

RBP type

Evidence RBPdetect2

Probability 0,51

Protein sequence

MNINKVSQSIESQSPDFIGSEYPLFNKFLEYYYKSQEKTGIGQNILNNFLQYLDIDKLDIGILDGATTLVEAITDSSDKIVVESINPFLETNGSILIGDEVIYYEGVDKSPEISLSPGISYEQVKLKWTTLASLINSFDGTTTSFAITSQDSPIAPPSAQHLVVSLYGNILVPNIDYTVSGSNIVFTTAPRTKIPADDAGSTYIFYLSGFVENTIYGLDNLSGAFGDGKKQFSLTRNGVKYEPEVEEYLNVIYDNRLLVPKVDYFIDEDQFVFKVAPLNGRFLSIYSIEAPIPSFGNGAVGFSRINDNGLLTSVSSSAIGTGYRFEYPPQVSIDSEQGSGAAATALVNGLKSITLLEGGRGYSSTNPPVVQVQSPTKTGSSQATINATVVDGAVTALNISNSGSGYTFTPRITFVQPGGAKLGTPVITNGQVTSIPVTDGGFGYTTAPTVYIDESTGSNPIKAALRANLTDGKVTSITILNAGQGYTTTPRVAIIDPVGAQVLETIVDGDGRVIRVDLLNGGSGYDDVPSVYIVDNRTNGGTGATAVASIFNGQITDLNINAFGSGYSAANPPEIVIQAPPQAKASVEIGLNEVTGFVVTESGKGYNKAAFTGCARAASGITKYTETGNAVFSNNTVAASATVGSSVKCLDALFVKRLLDKYTEQFLPDVPELDYSKIDVRTSIKTIKDFYSSKGTSFSIAYLFKLLYGETVTVTYPKDQIIKPSAATWSIDTILRATLVSGNADNIRDGLLTQEADIADPNVTAASALVENYISIKTSDVEIFELVLSEETIVGTFTVPYKTKLAEPLNTTDSIITVDSTIGWPERNGEFVIGGGTTTELVQYKEKSLNQFIECTRSANGIVEDWDSATQVASNFTVYVNRGTPQEVVLNVVGIVDAQQTVLTDTGSYYLPGDKLTVSKLGGTSIDPHLTTWLYNVKKLINVSTVTFGGVNNRFATITCSNNHGLLVGDQVTVYGANPIIYNGTFLVTSRDSATVFQYQLPQPATVVPQGNILVSVDLNKGKSTSSAVLNAIGPYTTNVQNSFFNTNYAYLASTGIPNYNIGPFPGSALLPGNQRKLNRFPITSTTISTKNTVSPGPIGTWVNGVSIWSYKSTLKKTFGAVTSVAITNAGKEYDAASPPVLTISGGGGTGATAAVVVNGSVNEITVSTGGSGFTSSPLVSIVGGGGSGASATAIITKGVVSRILINSGGTGYTSQPSITVVGGGGTGAAATASVRGPIQSVSVGSGGISYTSTPTVSLSSGSGAVAQAIVQNGRIISIAIISAGSGYTTAPEITIQGEGFGAVARASIDTDGENAGRVTSITIVNRGIGYLQGTTNINLNSVGSEATFTANVFEWTYNLQSTTTFDAAKGSVFEGFNNQYGGEYAHLSNPQTLRYILGDNLFENTSGVIKEKEDGLIHSPIIGWAFDGNPIYGPYGYSDPTDQSSAIQKLNTSYRLKTNLVYNVDSNPNPVRTAGPLLSAEAAGKFVEDYEYVFGLGALDQYNGRFCKTPEYPEGRYSYFVTIDATDDGNPLFPYVMGPSFNSVVDSWNLNADAVQQNIPEGVVRYRDPYENVDIDVERAPNASTNALTLENGDVLLFDLEDEDRSGVIEADEIADPDQVFEESPLQLFDYFPKVKFDSKVDIEVETTTKFEDASVTGFTVENPGISYQVNDRLIFDNTDTDGSGVSARISRIKGEAVEAYTFENVSGNNFGVLTTVNPHNLQPGDSVFVDYTPVMDSTNKTFVVRQFKGIEEIVVNQTGSGYNTDIPPTIIIDGNGTGGRLEAVVTSVGSIENVNIINSGYGYTSNPRVILSHPQVFKKADYYVAKFTNRNYVRISDVYINDSKETYICGKTYDAASNDVAFIAKLSATGVKEWEASLELPGGQQDSEFL

Physico‐chemical properties

protein length:	1892 AA
molecular weight:	201295,45000 Da
isoelectric point:	4,54765
aromaticity:	0,09302
hydropathy:	-0,08758

Domains

Domains [InterPro]

DC_0042
ATT
1–434

DC_0042 DC_1338 DC_0832 IPR018247

DC_0832
ATT
418–541

DC_0832 IPR023366 DC_0695 IPR025924

DC_0115
STR
1478–1888

DC_0115

AFD02935.1

1 1892

Architecture

ATT

STR

ATT 1-541 | ATT 701-1508 | STR 1509-1888 |

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Domains [InterPro]

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
DC_0042	ATT	DC_0042	1	434	Novel HMM	DC_0042	N-terminal	Low	Positional only	75 proteins / 75 hits
DC_0832	ATT	DC_0832	418	541	Novel HMM	DC_0832	N-terminal	Low	Positional only	64 proteins / 64 hits
DC_1338	ATT	DC_1338	701	1188	Novel HMM	DC_1338	N-terminal	Low	Positional only	78 proteins / 78 hits
IPR023366	STR	IPR023366	939	1015	Merged direct domain	ATP synthase subunit alpha, N-terminal domain-like superfamily	Central	Low	Positional only	44 proteins / 44 hits
DC_0695	ATT	DC_0695	1169	1238	Novel HMM	DC_0695	N-terminal	Low	Positional only	54 proteins / 54 hits
DC_0832	ATT	DC_0832	1225	1508	Novel HMM	DC_0832	N-terminal	Low	Positional only	64 proteins / 64 hits
IPR025924	STR	DC_0819	1329	1526	InterPro cluster	YHYH domain	Central	Low	Positional only	112 proteins / 112 hits
DC_0115	STR	DC_0115	1478	1888	Novel HMM	DC_0115	Central	Low	Positional only	18 proteins / 18 hits
IPR018247	Unmapped	-	1603	1615	InterPro	EF-Hand 1, calcium-binding site	-	-	-	-

Taxonomy

	Name	Taxonomy ID	Lineage
Phage	Synechococcus phage metaG-MbCM1 [NCBI]	1079999	Uroviricota > Caudoviricetes > Pantevenvirales > Galenevirus > Galenevirus mbcm1
Host	Synechococcus [NCBI]	1129	cellular organisms > Bacteria > Bacillati > Cyanobacteriota/Melainabacteria group > Cyanobacteriota > Cyanophyceae

Coding sequence (CDS)

Genbank protein accession

AFD02935.1 [NCBI]

Genbank nucleotide accession

JN371769 [NCBI]

CDS location

range 54178 -> 59856
strand +

CDS

ATGAACATTAATAAGGTTTCCCAGTCGATTGAGTCTCAATCACCAGACTTTATTGGATCAGAATATCCTCTGTTTAATAAGTTTCTTGAGTATTATTACAAATCTCAAGAGAAGACTGGTATAGGGCAAAATATACTTAATAACTTCCTCCAGTATCTTGATATCGACAAACTTGATATCGGTATCCTAGATGGTGCGACAACGCTTGTAGAAGCGATTACAGACAGTTCAGATAAGATTGTTGTTGAGAGTATCAACCCGTTCCTAGAAACGAATGGGTCTATTCTAATTGGCGATGAAGTCATATATTATGAAGGTGTAGATAAATCTCCAGAAATCTCACTTTCCCCAGGTATTTCATATGAACAGGTAAAACTTAAGTGGACTACTCTTGCTAGTCTTATCAACAGTTTTGATGGTACCACTACATCATTTGCAATAACATCTCAAGACAGTCCAATTGCTCCCCCTTCAGCACAGCATTTGGTTGTTTCTTTGTATGGTAATATTTTAGTTCCAAATATTGATTATACAGTTAGCGGATCAAATATTGTATTCACTACTGCACCTAGAACAAAAATTCCTGCTGATGATGCAGGTTCAACTTATATCTTCTATCTCAGCGGTTTTGTTGAGAACACCATTTATGGATTGGACAATCTGTCTGGTGCTTTTGGTGATGGTAAGAAGCAGTTCAGTCTAACTCGTAATGGAGTTAAGTATGAACCAGAAGTTGAAGAGTATTTGAATGTAATTTATGATAATCGTCTCTTAGTTCCTAAAGTTGATTACTTTATTGATGAAGACCAGTTTGTATTTAAAGTAGCACCCCTTAACGGTCGTTTCTTATCAATTTATTCAATTGAGGCACCCATCCCGTCTTTCGGTAATGGTGCAGTTGGTTTTTCTCGTATTAATGATAATGGACTTTTAACAAGTGTTTCATCTAGTGCTATTGGTACTGGATATCGCTTTGAATATCCTCCTCAAGTTAGCATTGACTCTGAGCAAGGTTCAGGTGCTGCTGCAACTGCCCTTGTCAATGGTTTGAAGTCAATCACCCTACTAGAGGGTGGAAGGGGTTACAGTTCGACTAACCCTCCTGTTGTGCAGGTTCAATCTCCTACCAAAACTGGTTCTAGTCAAGCAACTATTAATGCAACGGTTGTTGACGGTGCAGTTACTGCGCTGAATATTAGCAACTCTGGTTCTGGTTATACTTTTACTCCTAGAATTACTTTTGTTCAACCTGGTGGTGCAAAACTAGGTACTCCTGTAATTACTAATGGTCAAGTTACTTCCATTCCTGTTACTGATGGAGGTTTTGGTTATACTACTGCTCCAACTGTTTATATTGACGAATCAACTGGTTCAAACCCAATTAAGGCAGCATTGAGAGCAAATCTTACTGATGGTAAGGTTACCAGCATTACAATTTTGAATGCAGGGCAAGGATATACTACTACACCTAGGGTTGCTATTATTGACCCTGTAGGTGCACAGGTATTAGAAACTATTGTTGATGGTGATGGGCGTGTTATTAGAGTTGATCTACTGAATGGTGGCAGCGGATATGATGATGTGCCTTCAGTCTACATTGTAGATAATAGAACTAACGGTGGTACTGGTGCGACTGCAGTTGCTTCTATTTTCAACGGTCAAATCACTGATCTTAATATTAATGCCTTTGGTAGCGGTTACTCTGCTGCAAATCCTCCAGAGATTGTAATTCAAGCACCTCCTCAAGCAAAAGCATCTGTTGAAATTGGTCTTAATGAAGTTACAGGTTTCGTAGTTACTGAGTCAGGTAAAGGATACAATAAGGCAGCATTTACTGGATGTGCGAGAGCAGCATCTGGTATTACTAAGTACACTGAAACAGGTAATGCAGTATTCAGTAATAACACTGTAGCAGCATCTGCAACGGTTGGTTCAAGCGTTAAGTGTTTAGATGCGCTATTTGTTAAGAGACTACTAGACAAGTATACAGAACAGTTCTTACCTGATGTTCCAGAACTTGACTACTCTAAGATTGATGTTCGTACATCGATCAAAACTATTAAAGATTTTTATTCATCTAAAGGTACTTCGTTCAGTATTGCTTATCTGTTCAAGTTACTTTATGGTGAAACTGTTACGGTCACATATCCAAAAGACCAAATCATCAAACCCTCTGCAGCAACTTGGTCTATCGACACAATTTTGCGTGCAACCCTAGTAAGTGGTAATGCTGATAATATTAGAGATGGTTTGTTAACTCAAGAAGCAGATATTGCAGATCCTAACGTAACTGCTGCAAGTGCCTTAGTTGAAAACTATATTTCAATCAAAACCTCTGATGTAGAGATTTTTGAACTTGTTCTCTCAGAAGAAACTATTGTTGGGACGTTTACCGTACCATATAAGACAAAACTTGCTGAACCTCTTAATACAACCGATTCAATCATTACGGTTGACTCTACAATTGGTTGGCCAGAACGAAATGGTGAATTTGTTATTGGTGGTGGTACAACAACTGAACTTGTACAGTATAAAGAGAAATCACTCAACCAGTTCATCGAATGTACTCGTTCTGCAAACGGTATTGTAGAAGACTGGGATTCTGCAACTCAAGTTGCTTCTAACTTCACGGTATATGTGAATAGAGGAACTCCTCAAGAAGTAGTACTGAATGTTGTTGGTATTGTTGATGCACAGCAAACTGTTCTTACTGACACTGGTTCATACTACCTACCTGGTGATAAACTCACTGTGTCTAAGTTAGGTGGAACTAGTATTGATCCTCATTTAACTACATGGTTATATAACGTCAAAAAACTTATCAATGTTTCCACAGTTACCTTTGGAGGCGTTAATAATAGATTTGCAACTATTACTTGTTCAAACAATCACGGTTTATTGGTTGGTGATCAGGTTACAGTTTATGGTGCAAACCCAATCATCTATAATGGCACATTCCTTGTAACATCTAGGGATAGTGCAACAGTATTCCAATATCAGTTACCCCAACCCGCAACTGTGGTACCACAGGGTAATATCCTAGTATCTGTTGACTTGAACAAAGGTAAGTCTACAAGTAGTGCTGTATTGAATGCTATTGGTCCTTATACGACTAACGTTCAAAACTCATTCTTCAATACAAACTATGCATACCTAGCATCTACAGGTATTCCAAACTATAATATTGGTCCTTTCCCAGGATCTGCTCTACTTCCAGGAAACCAACGTAAGTTGAATCGTTTCCCGATTACTTCTACAACAATTTCTACAAAGAACACCGTTTCTCCAGGTCCTATCGGAACTTGGGTTAATGGCGTTTCTATCTGGTCTTATAAGTCAACTCTCAAGAAAACCTTTGGTGCTGTAACTAGCGTTGCTATTACAAATGCAGGTAAAGAATATGATGCTGCATCTCCACCAGTATTAACTATCAGTGGTGGCGGAGGAACTGGTGCAACTGCTGCGGTTGTTGTTAACGGTTCTGTTAATGAAATTACTGTATCTACAGGGGGTTCTGGGTTTACTTCTTCTCCTCTAGTCTCTATCGTTGGTGGAGGCGGTTCTGGAGCGTCTGCAACTGCTATTATTACAAAAGGGGTTGTTTCTAGAATTCTAATCAACTCAGGTGGTACTGGATACACCTCACAACCTTCTATTACTGTTGTTGGTGGCGGTGGTACTGGTGCTGCAGCAACTGCATCTGTTCGTGGTCCTATTCAGTCTGTTTCTGTTGGATCAGGTGGTATTTCTTATACTTCTACTCCTACTGTATCGTTAAGTTCTGGTAGTGGTGCTGTTGCACAAGCAATTGTACAGAATGGTCGTATTATTTCGATCGCTATCATTTCTGCAGGTTCTGGATACACAACTGCTCCCGAAATTACTATTCAGGGTGAAGGTTTTGGTGCTGTTGCTAGAGCATCTATTGATACTGATGGTGAAAACGCAGGTAGAGTTACAAGCATTACTATTGTTAACCGAGGTATTGGATATCTTCAAGGAACAACTAATATTAACCTGAACTCTGTTGGTTCTGAAGCAACTTTCACTGCAAACGTATTTGAATGGACTTATAACTTACAATCAACTACTACATTTGATGCTGCTAAGGGTTCTGTCTTTGAAGGATTTAATAATCAGTATGGTGGTGAGTATGCTCACTTATCAAACCCTCAAACACTAAGATATATTCTTGGTGACAACTTATTTGAAAATACATCAGGCGTAATCAAAGAAAAGGAAGACGGTTTAATACACTCTCCTATTATTGGTTGGGCATTTGATGGTAACCCAATTTACGGTCCTTATGGTTACTCCGATCCTACTGATCAGTCATCTGCGATTCAAAAACTTAATACTTCATATAGATTAAAGACAAATCTTGTTTATAATGTAGATTCTAACCCAAATCCTGTTAGAACAGCAGGTCCTTTACTATCTGCTGAGGCAGCAGGTAAATTTGTTGAAGACTATGAGTATGTGTTCGGTCTTGGTGCATTAGATCAGTATAACGGTAGATTCTGTAAGACTCCTGAGTATCCCGAAGGTAGATATTCTTACTTCGTTACTATTGATGCAACTGACGATGGTAATCCATTATTCCCTTATGTTATGGGTCCTAGTTTCAACTCTGTTGTTGATTCTTGGAACTTGAATGCTGATGCTGTACAACAAAATATTCCAGAAGGTGTTGTTAGATATCGTGACCCTTATGAGAATGTTGATATTGACGTTGAGAGGGCACCTAATGCTTCTACAAACGCTCTAACACTAGAGAATGGAGATGTATTACTATTTGATTTAGAAGACGAAGATAGAAGTGGTGTTATTGAAGCGGATGAGATTGCTGATCCTGATCAGGTCTTTGAAGAGTCACCATTACAGTTATTTGATTACTTCCCCAAAGTCAAGTTTGACTCTAAGGTTGATATTGAAGTTGAAACAACTACTAAGTTTGAAGATGCTTCTGTAACTGGATTTACAGTTGAAAACCCAGGTATATCTTATCAGGTTAATGATAGACTAATCTTTGACAATACTGATACTGATGGTAGTGGTGTTTCTGCTCGAATTTCTAGAATTAAAGGTGAAGCGGTTGAAGCATATACATTTGAAAATGTAAGTGGTAATAACTTCGGTGTTCTTACCACAGTCAATCCTCATAACCTACAACCAGGTGACAGCGTATTTGTTGACTACACTCCTGTCATGGACAGCACTAATAAAACATTTGTTGTTCGTCAATTTAAAGGTATTGAAGAGATTGTAGTTAATCAAACTGGATCTGGTTATAATACTGATATTCCTCCTACTATCATTATCGATGGTAATGGAACTGGCGGTAGACTTGAAGCAGTTGTAACTTCTGTTGGTTCTATTGAAAATGTCAATATTATCAACTCTGGTTATGGATACACAAGCAATCCTAGAGTTATCCTTTCACATCCTCAAGTTTTCAAAAAAGCAGACTACTATGTCGCTAAGTTTACTAATAGAAACTATGTGAGGATCAGTGATGTATACATTAATGATTCTAAAGAAACTTATATTTGCGGTAAAACTTATGATGCTGCATCTAATGATGTTGCATTCATTGCAAAACTCTCTGCTACGGGTGTTAAGGAATGGGAAGCATCCTTAGAACTTCCAGGTGGTCAACAAGACTCTGAATTCCTCTAA

Genome Context

Tertiary structure

PDB ID

1e552380ccc550aae1df9fde759f70e5cc96c9ed3c3310564e2725a8c093a58e

ColabFold

Source ColabFold

Method ColabFold

Resolution 0,7852

Oligomeric State monomer

Download PDB

Model Confidence

Very high
pLDDT > 90

High
90 > pLDDT > 70

Low
70 > pLDDT > 50

Very low
pLDDT < 50

Literature

Title	Authors	Date	PMID	Source
Viral Tagging: a high-throughput approach to explore virus-host interactions	Deng,L., Sullivan,M.B., Poulos,B. and Ignacio Espinoza,J.C.	2019-08-05	—	GenBank

Protein

Domains

Domains [InterPro]

Domains [InterPro]

Taxonomy

Coding sequence (CDS)

Coding sequence (CDS)

Genome Context

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)

Model Confidence

Literature