Protein

View in Explore
Genbank accession
QDH46888.1 [GenBank]
Protein name
putative collar domain containing protein/baseplate wedge protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence RBPdetect
Probability 0,78
TF
Evidence RBPdetect2
Probability 0,93
Protein sequence
MEDLAMSVESNVNFIPELNDQFPRKNDLIKEGDDHIRLVKKVLKNTLPGFNKALTITADSMNNFDRNVGFETDTVILKGAMRVDGSINVNGKKLTGLATPTADGDAVSWKFVKDLTTAIYNTTWPINSIYFTVDDRNPSVILGFGTWEKFGQGRVPVGTGTGVDVRNESKTFVNSGVGGNYSSVLTIDNLPSHTHQLSLDTTSGGEHRHDGGVAIRASSSQPFGKAVAHEELFSYEHHKYGEDIGTAWTSTVIGHTHSIQGNTVATGSGFGFNTQNPYIGVSMWKRTA
Physico‐chemical
properties
protein length:288 AA
molecular weight: 31296,45170 Da
isoelectric point:6,04712
aromaticity:0,08681
hydropathy:-0,37465

Domains

Domains [InterPro]
DC_0033
STR
6–288
DC_0033
IPR053827
ATT
120–287
IPR053827
QDH46888.1
1 288
Architecture
STR
ATT
STR 6-119 | ATT 120-288
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QDH46888.1
1 288
Domain Start End Length (AA) Confidence
N-terminal 1 111 111 0,9873
Central domain 112 277 167 0,0021
C-terminal 278 288 10 0,9975
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-111
Central
112-277
C-terminal
278-288

Taxonomy

  Name Taxonomy ID Lineage
Phage Aeromonas phage LAh_9
[NCBI] 		2591033 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Aeromonas hydrophila
[NCBI] 		644 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Aeromonadales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QDH46888.1 [NCBI]
Genbank nucleotide accession
MK838115 [NCBI]
CDS location
range 96429 -> 97295
strand -
CDS
ATGGAGGATCTGGCTATGTCAGTAGAAAGTAATGTAAATTTTATACCAGAGCTGAATGATCAGTTCCCTCGTAAAAATGATTTGATTAAAGAGGGGGATGATCATATTAGGTTAGTTAAAAAAGTCCTAAAGAACACTCTCCCAGGTTTTAACAAAGCCTTAACAATAACAGCAGATTCTATGAACAACTTTGATAGAAATGTTGGTTTTGAAACGGATACAGTTATCCTGAAAGGGGCTATGCGTGTTGATGGTTCAATAAATGTTAATGGCAAAAAATTAACAGGTCTGGCGACACCTACTGCGGATGGTGATGCGGTTTCTTGGAAGTTTGTTAAAGATTTGACAACTGCAATCTATAATACTACTTGGCCAATAAACTCAATTTACTTTACCGTTGATGACAGAAACCCATCTGTCATACTGGGATTTGGTACTTGGGAGAAATTTGGACAAGGTAGGGTTCCGGTTGGTACGGGAACTGGTGTGGATGTTAGAAACGAATCAAAGACGTTTGTAAACAGTGGAGTTGGTGGGAATTACTCATCAGTGTTAACAATTGACAATCTGCCATCACACACCCACCAACTCAGTTTGGATACTACATCTGGTGGTGAACACCGGCATGACGGTGGTGTTGCGATACGAGCCTCATCTTCACAACCGTTCGGTAAAGCTGTGGCTCATGAGGAACTATTTTCATATGAACACCATAAATATGGAGAGGATATCGGGACAGCATGGACTAGCACTGTAATTGGTCACACCCACTCTATCCAAGGAAATACTGTTGCAACTGGTAGTGGATTTGGTTTCAATACGCAAAACCCATATATTGGTGTAAGTATGTGGAAAAGAACTGCATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
60caa0740af30d2e816afafcad657e1349b5b4eb40e9ec15705bf82501c6713d
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7051
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Novel bacteriophages capable of disrupting biofilms from clinical strains of Aeromonas hydrophila with intrinsic antibiotic resistance Kabwe,M., Brown,T.L., Speirs,L., Ku,H., Leach,M., Chan,H.T., Petrovski,S., Lock,P. and Tucci,J. 2020-02-14 — GenBank