Protein

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Genbank accession
ADD65703.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TF
Evidence RBPdetect
Probability 0,89
Protein sequence
MTLDGFRDVTETPISLDFSNSWIADIRLNAGDKDGRTITVAITDNGQPITSTTGIKSVALAYNTAPGVEVGDRVPMTPVSGQATATYRATLPRRAIAKPGVIALGVEVTTADGVKVCSRNFKGVIERAVWDAESTQGQDSLTRLEQLIADGDAAIIRVNNAITDANNAVAAANQVIADARITGGNTTTLDPNQPATSSLRGSGLQRILDLGIPRGAGVTSAGATTLDPNKPATASMLQAGSKGDYTLMVGVPRGSRIIGVGANTVNPSREAGASMSTDGAGDMSLILDIPRGSRIAGVTARTLDTGEDATVTATRDAAGDATLAFGLPRGEKGDKGDPGDAGQIATATVAGVVKPGDNLSVRADGTLDAAAARYELPVASDTTLGGVKVSKVDYTDARTFPVVVRDGEKLGLSFKLGDNAMPDGIEFYGTENTTIGLKKATQDALGIVRGGGKGIHVAGDGTLNLDLPAATAGAIGGVKPDGKTITAAADGTITAVAQTGPVEYRELVGYENAAQGYAVRVSDRTWLCCFNSFAMQTDGTTRLPYFYAFLRQAGSSSLTALVANPFDTNGITLLSTDGEQMRFSYGGGGRWAGVRAVSGLDAATLILTEA
Physico‐chemical
properties
protein length:610 AA
molecular weight: 62521,21800 Da
isoelectric point:4,93092
aromaticity:0,04754
hydropathy:-0,08148

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Bifidobacterium phage Bbif-1
[NCBI] 		743964 No lineage information
Host Bifidobacterium bifidum
[NCBI] 		1681 cellular organisms > Bacteria > Bacillati > Actinomycetota > Actinomycetes > Bifidobacteriales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
ADD65703.1 [NCBI]
Genbank nucleotide accession
GQ141189.1 [NCBI]
CDS location
range 2748 -> 4580
strand -
CDS
ATGACCCTCGACGGATTCCGCGACGTCACCGAGACGCCCATCAGCCTCGACTTCTCCAACAGCTGGATCGCCGACATCCGACTCAACGCCGGCGACAAGGACGGACGCACCATCACCGTCGCCATCACCGACAACGGCCAGCCAATCACCTCCACGACCGGCATCAAGAGCGTGGCGCTCGCCTACAACACCGCGCCGGGCGTCGAGGTCGGCGACCGCGTGCCCATGACCCCCGTGAGCGGGCAGGCGACCGCCACATACCGGGCGACGCTGCCCAGGCGGGCGATCGCCAAGCCCGGCGTCATCGCCCTGGGCGTGGAGGTCACCACCGCGGACGGCGTCAAGGTCTGCTCCCGCAACTTCAAGGGCGTGATCGAACGCGCCGTATGGGACGCCGAAAGCACCCAGGGGCAGGACAGCCTCACCCGCCTCGAACAGCTCATCGCGGACGGCGACGCCGCCATCATCCGCGTCAACAACGCCATCACCGACGCGAACAACGCGGTCGCGGCCGCCAACCAGGTCATCGCGGACGCGCGCATCACCGGCGGCAACACCACCACCCTCGACCCGAACCAGCCGGCCACGTCCTCGCTGCGCGGCAGCGGCCTGCAGCGCATCCTTGACTTGGGCATCCCGCGCGGCGCGGGCGTCACCAGCGCCGGCGCCACCACGCTCGACCCCAACAAGCCCGCCACCGCGAGCATGCTGCAGGCCGGAAGCAAGGGCGACTACACGCTGATGGTCGGCGTGCCACGCGGCAGCAGGATCATCGGCGTGGGCGCGAACACCGTCAATCCCTCACGGGAGGCGGGCGCCAGCATGTCCACCGACGGCGCGGGCGACATGAGCCTCATCCTCGACATCCCACGCGGCAGCCGGATCGCCGGCGTGACGGCCCGCACCCTCGACACCGGCGAGGACGCCACCGTCACCGCCACCCGGGACGCGGCCGGCGACGCCACGCTCGCGTTCGGCCTGCCGCGGGGAGAGAAGGGCGACAAGGGCGATCCCGGGGATGCCGGGCAGATCGCCACCGCCACCGTCGCCGGCGTCGTCAAGCCCGGCGACAACCTGAGCGTGCGCGCCGACGGCACGCTCGACGCCGCCGCGGCCCGGTACGAGCTGCCCGTCGCGAGCGACACGACCCTCGGCGGCGTCAAGGTCAGCAAGGTCGACTACACGGACGCCCGCACGTTCCCCGTCGTCGTGCGCGACGGCGAGAAACTCGGCCTGTCGTTCAAACTCGGAGACAACGCCATGCCCGACGGCATCGAGTTCTACGGCACCGAGAACACGACCATCGGCCTGAAGAAGGCCACGCAGGACGCGCTCGGCATCGTCAGGGGAGGGGGCAAAGGCATCCATGTCGCCGGGGACGGCACCCTCAACCTTGACCTGCCCGCGGCGACGGCGGGCGCGATCGGCGGCGTCAAGCCCGACGGCAAGACCATCACCGCCGCCGCGGACGGCACCATCACCGCCGTCGCGCAGACAGGCCCGGTGGAGTACAGGGAGCTCGTCGGATACGAGAACGCGGCGCAGGGATACGCGGTCCGCGTCTCCGACAGGACATGGCTGTGCTGCTTCAACTCGTTCGCCATGCAGACGGACGGCACGACACGACTGCCATACTTCTATGCCTTTCTCCGGCAGGCCGGCTCCTCGAGCCTGACCGCGCTGGTGGCCAACCCGTTCGACACGAACGGCATCACCCTCCTCTCCACCGACGGCGAACAGATGCGGTTCTCGTACGGAGGGGGCGGGCGCTGGGCCGGCGTGCGCGCGGTATCCGGCTTGGACGCCGCCACCCTCATCCTCACCGAGGCCTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
1dc5f2acb6b3aa86bdb95c2d40d7403808f059ed38d31fde5012480cf63c8b32
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6788
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Comparative analyses of prophage-like elements present in bifidobacterial genomes Ventura,M., Turroni,F., Lima-Mendez,G., Foroni,E., Zomer,A., Duranti,S., Giubellini,V., Bottacini,F., Horvath,P., Barrangou,R., Sela,D.A., Mills,D.A. and van Sinderen,D. 2009 19734330 GenBank